| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1162 |
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| Symbol | |
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| ID | 4017686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1337058 |
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| End bp | 1338170 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637955152 |
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| Product | thiamine pyrophosphate enzyme-like TPP-binding |
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| Protein accession | YP_562171 |
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| Protein GI | 91792520 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
[COG4032] Predicted thiamine-pyrophosphate-binding protein |
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| TIGRFAM ID | [TIGR03297] phosphonopyruvate decarboxylase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAACTAC AAAATATAAC GTTTTGGAGT TCAGTGCCGT GCTCAATATT GAATCCTTTA
TATAACGTAT TTTCCCGAAG TGATGATATT AGAAGTGTCA CCGCAACTTC AGAAGGCGAA
GCTGTTGGTA TCGCAAGTGG AGCATGGCTA GCAGGAGAAA GAGCTGGAGT TATGATGCAA
AACTCTGGTC TTGGAAATGC TATTAACCCA CTGACATCAC TTAATATTCC TTTTCAGATC
CCTCTTGCTT TAATGATTAC CTGGAGAGGG AAGCCGGGTA TGAAGGATGA ACCTCAGCAT
GAGTTCATGG GGAAAATCAC GCCTTCGTTG CTTAGTCTAT TGGAGTTTGG TGCAGAAGAA
ATTTCAACGG ATTTAGTGAG ATTAGAGCAG AGCTTTAGAA CGCTTGCAGC GCAATTAGAT
GAGCGTAAGT CTCACGCTTT GTTAATACCC TCTGGTATTT TGTCTTCGCA AGCATTTGAT
GTCACTCCAT CAAATGAAAT AGTGACAACT TCAGTACAGA ACTTCCTTGA TAACAGAGGG
ATACCTACCC GATACAAAGC TATTGAAGCT TGTTTGGATA CCCTGCCTGA ACTATCCGCT
ATTATTGCCA CCACAGGCAA AACCGGGCGG GAACTTTTCA CTATTGGAGA TCAGGAACGT
TTCTTTTATC AGGTTGGATC AATGGGGTGT GCTTCTGCTA TCGGATTAGG GGTAGCGTTG
AACTCAAAAT TACCGATTGT CATTTTTGAT GGCGATGGCG CAGCTCTTAT GAAACTCGGT
AATTTGGCGA CGATCGGTAA TCAATCACCG GAAAATCTGA TTCACATCAT TTTTGACAAT
GGAGTTTACG ATTCAACCGG GGGGCAATTT ACTCACTCTC AGACAACTGA TTTTGCGGAG
ATTGCAAAGG CCTGTGGCTA TTGTAACGTT TACCGGGCTA ATTCTATTGA GGGGCTGCGC
AAGTCAGTTA CGAACGCTGT TAAAGAATCT GGCCCTAATT TAATCCATAT GAAAATTGCA
CCGGGTAGCT TAAAAAATCT GGCAAGACCA ACAGTCTCTC CATCTGAAGT TGCTTTCAGA
TTCAGGACAT TTCTAACCAA ACACAAGTTA TAG
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| Protein sequence | MKLQNITFWS SVPCSILNPL YNVFSRSDDI RSVTATSEGE AVGIASGAWL AGERAGVMMQ
NSGLGNAINP LTSLNIPFQI PLALMITWRG KPGMKDEPQH EFMGKITPSL LSLLEFGAEE
ISTDLVRLEQ SFRTLAAQLD ERKSHALLIP SGILSSQAFD VTPSNEIVTT SVQNFLDNRG
IPTRYKAIEA CLDTLPELSA IIATTGKTGR ELFTIGDQER FFYQVGSMGC ASAIGLGVAL
NSKLPIVIFD GDGAALMKLG NLATIGNQSP ENLIHIIFDN GVYDSTGGQF THSQTTDFAE
IAKACGYCNV YRANSIEGLR KSVTNAVKES GPNLIHMKIA PGSLKNLARP TVSPSEVAFR
FRTFLTKHKL
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