| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1144 |
|---|
| Symbol | |
|---|
| ID | 4017317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1315261 |
|---|
| End bp | 1316397 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637955134 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_562153 |
|---|
| Protein GI | 91792502 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0371037 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGCT GGTCCAAATT TGACATAGAA ATGATGAGCC GTGCCATCCA ATTGGCAGAA
CGAGGCCGTT ATACCACTCG CCCCAATCCT TGTGTGGGCT GCGTAATTGT CAAAGATGGC
ATCAAGTTAG CCGAGGGCTA CCATCAGAAA GCGGGCTTTG GTCACGCCGA AGTTAACGCC
CTTGCTGCGC TGAAATCCGC CAATTTATCC GCCATAGGCG CCACCGCCTA CGTAACCTTA
GAGCCTTGCA GCCATTTCGG CCGCACCCCG CCTTGCGCCC AAACCTTAGT GGAAAGCGGT
GTCGCCAAAG TGGTGGTCGC CATCACAGAT GCTAATCCAC AGGTTGCCGG TAAAGGCATT
GCTATGCTGC GAGAAGCTGG CATAGCGGTT GAAGTCGGTT TATTGCAAGC CCAGGCTCTT
GAGTTAAATT TAGGCTTTAT GAAGCGCATG CGCACAGGTT TGCCTTGGGT GACAGTGAAA
CTTGCTGCAA GTCTTGACGG TAAAACTGCG CTCTCAAATG GGGTGTCTAA ATGGATAACG
GGCGATGCAT CCCGTAACGA TGTGCAAAAA CTTCGCGCCA GAAGCTGCGC GTTAATCACA
GGCATAGAAA CCGTATTAGC CGATGACCCG AGCCTTAATG TGCGCTATCA AAGCCTTGGC
AGTCTTAAAG ATGAGCTTGA TGTGACTGAG CTTCACCAGC CAGTAAGAAT CGTACTCGAC
AGTAAAGCGA GGCTTACAGC AGACAAAAGG CTTTTTAGCA TCACTAGCCC CATTATCTTG
GTCAGCACTC AAGCCTACCC CGAGACAGTT ATCTTTCCAG CCCATGTGCA ATGCCTGCAG
TTTGCGCCAG ACAATGATGG CAGAGTGCCG TTGATAAGCC TATTTCACCA CTTAGGCAAA
AGCTATAATC AGGTATTAAT TGAAGCCGGC GCCACCTTAG CGGGTAAGGT GCTCGAACTT
GGGCTTGGGG ATGAACTGTA TCTATATCAA GCGATGAAAA TCTTGGGTAG CCATGGGCGA
AACCTAGTGC AGTTACCGGA TTATCAGGCC ATGGATGATA TTCCAAGCTT GCAGCTGAAA
GACAGTCGCC AATTAGGCGA AGATAGACGC TATATTTTTA GACTTGGCAA AGAATAA
|
|---|
| Protein sequence | MPSWSKFDIE MMSRAIQLAE RGRYTTRPNP CVGCVIVKDG IKLAEGYHQK AGFGHAEVNA
LAALKSANLS AIGATAYVTL EPCSHFGRTP PCAQTLVESG VAKVVVAITD ANPQVAGKGI
AMLREAGIAV EVGLLQAQAL ELNLGFMKRM RTGLPWVTVK LAASLDGKTA LSNGVSKWIT
GDASRNDVQK LRARSCALIT GIETVLADDP SLNVRYQSLG SLKDELDVTE LHQPVRIVLD
SKARLTADKR LFSITSPIIL VSTQAYPETV IFPAHVQCLQ FAPDNDGRVP LISLFHHLGK
SYNQVLIEAG ATLAGKVLEL GLGDELYLYQ AMKILGSHGR NLVQLPDYQA MDDIPSLQLK
DSRQLGEDRR YIFRLGKE
|
|---|
| |