Gene Sden_1108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1108 
Symbol 
ID4017651 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1271112 
End bp1271810 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content46% 
IMG OID637955100 
Productalpha/beta hydrolase fold 
Protein accessionYP_562119 
Protein GI91792468 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCAAA AGTTGTATTT ATTGCCAGGC ACCATGTGCA ACCACAGATT ATGGACAAGG 
CTTCAGCCTC ATTTGGACAG TGCGTTTGAG TTAATATACT TAGCGATTCC TCGAGACATG
GATCTTGAGC AACTCGCCGC GCACTTCCAT GACATCATTG GCGAGGATAA AATATGCCTC
ATCGGCTTTT CATTGGGCGG GTATATCGCC AGCTTGTTTG CCACCCGCTA CCCAGAGCGT
ATTGCCAAGT TGTTTGTGAT AGCCAATAGC CCGACAGCTT TAGCGGTTGC CGAGCTTGAA
CAGCGCAGTG CAATATTGAA GTTTGTGCAA TCTCATGGTT ATAAAGGCGC TAGCCGAAAA
AAGATAGCAA ACTTGTTCGA TGACTCAATT CAGCAAGGGG AACTTATCGA TTTGGTGCAG
CAGATGGATG CTGAGTTAGG TGAAGCCGAG TTTATCAGTC AGTATCAACA CACTTCCCAC
AGGGTCGATG TTATTCAAGC CTTGAGTGGG CTTAACTTTC CCATTCATTT TTATTGCAGT
GACCAAGACC CCTTGGTCGA TGTCGCGTGT TTGGATGAGT TAACGGCGCA AAGCCCACAG
TTTTTAATGC ACAAAACATT GGGCACAGGT CATATGTTGC CACTAGAAAA ACCACAGCAG
TTGGCCAAAC ACATACATGC CTGGGCAGCA CTTGATTAG
 
Protein sequence
MKQKLYLLPG TMCNHRLWTR LQPHLDSAFE LIYLAIPRDM DLEQLAAHFH DIIGEDKICL 
IGFSLGGYIA SLFATRYPER IAKLFVIANS PTALAVAELE QRSAILKFVQ SHGYKGASRK
KIANLFDDSI QQGELIDLVQ QMDAELGEAE FISQYQHTSH RVDVIQALSG LNFPIHFYCS
DQDPLVDVAC LDELTAQSPQ FLMHKTLGTG HMLPLEKPQQ LAKHIHAWAA LD