| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1083 |
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| Symbol | |
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| ID | 4017366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1239191 |
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| End bp | 1241185 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637955075 |
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| Product | transketolase |
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| Protein accession | YP_562094 |
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| Protein GI | 91792443 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000105408 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCCC GTAAAGTACT CGCTAACGCT ATCCGTGCAT TAAGTATGGA TGCAGTTCAA
AAAGCCAATT CAGGTCACCC TGGTGCACCT ATGGGTATGG CTGATATCGC CGAAGTGCTT
TGGAATGATT TCCTTAAGCA CAACCCGACG AACCCTGAGT GGGTCGATCG CGATCGTTTT
ATTTTATCAA ACGGTCACGG CTCTATGCTG ATTTACTCTT TACTGCACCT AAGCGGTTAT
GCTTTGCCAA TCGAAGAGCT AAAGCAATTC CGTCAGCTAC ATTCTAAGAC TCCAGGCCAC
CCTGAATACG GTTACACCCC AGGTGTTGAA ACCACCACTG GCCCATTAGG CGCAGGTATT
AGCAACGCGG TCGGTATGGC CATTGCTGAA AAAACCTTAG CGGCGCAGTT TAACCGTGAA
GGCCATGATA TCGTCGATCA CTTTACTTAC TGTTTCTTAG GTGATGGCTG TTTAATGGAA
GGCATCTCCC ACGAGGCCTG TTCATTAGCG GGCACCTTAG GCTTAGGCAA GTTAATCGCA
TTTTGGGATG ACAACGGCAT TTCAATCGAT GGTCATGTTG AAGGCTGGTT CACCGACGAT
ACCCCTAAGC GTTTCGAAGC TTATGGCTGG CACGTGATTG CTGGCGTGGA TGGTCACGAC
CCAGAAGCCA TTAAAGCGGC AATCAATGAA GCTAAGTCGG TCACCGATAA GCCAAGCATG
ATTTGCTGCA AAACCATTAT TGGTTTTGGT TCGCCAAACA AGTCTGGCAG CCATGACTGT
CACGGCGCGC CACTCGGAGA CGCTGAAATT GCTGCAGCGC GTGAATTCCT AGCTTGGCCA
CATGCCCCAT TCGAAATCCC AACAGACGTA TATGCAGGAT GGGATGCCAA AGAAAAAGGC
CAAGCGATTG AAGCGGCTTG GGAAAGCAAG TTTGAAGCCT ATAAAGCGGC TCACCCAGCA
CTGGCTGCTG AGTATGAGCG CCGCGTGTTA AAAGGTGACT TACCCGCAGA TTTTGAAGCC
AAGGCTCAAG CCTTCATTCA AGAGTGTCAA GATAAAGGCG AAGGCATTGC TAGCCGTAAA
GCCTCGCAAA ATGCTATCGG CTTCTTTGGT GCTATGTTGC CAGAGTTGTT AGGCGGCTCT
GCGGATTTAG CCGGTTCTAA CTTAACCTTA TGGTCAGGTT CTAAAGGCAT TCAAGACGAT
GCTGCCGGTA ACTACATCTA TTACGGTGTG CGTGAATTTG GCATGAGCGG CATCATGAAT
GGCGCGTCAT TGCACGGCGG TTTCATCAAC TACGGCGCGA CCTTCATGAT GTTTATGGAA
TACGCCCGTA ATGCGGTACG TATGTCTGCG CTGATGGGCA TTCAGAACAT CTTCGTTTAT
ACCCATGATT CTATCGGTCA AGGCGAAGAT GGCCCGACTC ACCAACCAGT TGAGCAGCTA
GCTAACTTAC GCATGACGCC AAATATGGCA GTATGGCGCC CCTGTGATGC CGCTGAAACA
GCGGTATCTT GGAAAGCGGC TATCGAGCGT CGTGATGCAC CAACGTCACT GATTTTCAGC
CGTCAAAACC TGAAAGCTCA AGCCCGCACG CCTGAGCAAT TAGCTAACGT TGCCAAAGGC
GCTTATGTGC TACTCGATTG CGCTGGCACA GCCGATGTCA TCTTAATGGC GACGGGTTCT
GAAGTGCAGC TTGCAATAGA AAGTGCTGCA GCATTAACCG AGCAAGGCGT TAAGGTGCGT
GTTGTGTCTA TGCCATCAAC CACAGAGTTT GATAAGCAAG ACATCGCTTA CAAAGAGTCT
GTATTGCCAA AAGTTGTGAC TAAGCGTGTA GCCATTGAAG CGGCACATGT GGATTTCTGG
CACAAGTACG TGGGCTTTGG CGGCGCTATG GTTGGTATGA CGACCTTTGG TGAGTCAGCC
CCAGGTGGTG ACTTGCTTAA GCACTTTGGT TTCACCGTCG ATAACGTAGT GGCGACAGTG
AAAAGCTTAG GCTAA
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| Protein sequence | MSSRKVLANA IRALSMDAVQ KANSGHPGAP MGMADIAEVL WNDFLKHNPT NPEWVDRDRF
ILSNGHGSML IYSLLHLSGY ALPIEELKQF RQLHSKTPGH PEYGYTPGVE TTTGPLGAGI
SNAVGMAIAE KTLAAQFNRE GHDIVDHFTY CFLGDGCLME GISHEACSLA GTLGLGKLIA
FWDDNGISID GHVEGWFTDD TPKRFEAYGW HVIAGVDGHD PEAIKAAINE AKSVTDKPSM
ICCKTIIGFG SPNKSGSHDC HGAPLGDAEI AAAREFLAWP HAPFEIPTDV YAGWDAKEKG
QAIEAAWESK FEAYKAAHPA LAAEYERRVL KGDLPADFEA KAQAFIQECQ DKGEGIASRK
ASQNAIGFFG AMLPELLGGS ADLAGSNLTL WSGSKGIQDD AAGNYIYYGV REFGMSGIMN
GASLHGGFIN YGATFMMFME YARNAVRMSA LMGIQNIFVY THDSIGQGED GPTHQPVEQL
ANLRMTPNMA VWRPCDAAET AVSWKAAIER RDAPTSLIFS RQNLKAQART PEQLANVAKG
AYVLLDCAGT ADVILMATGS EVQLAIESAA ALTEQGVKVR VVSMPSTTEF DKQDIAYKES
VLPKVVTKRV AIEAAHVDFW HKYVGFGGAM VGMTTFGESA PGGDLLKHFG FTVDNVVATV
KSLG
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