| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1054 |
|---|
| Symbol | argD |
|---|
| ID | 4017561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1204995 |
|---|
| End bp | 1206212 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637955046 |
|---|
| Product | bifunctional N-succinyldiaminopimelate-aminotransferase/ acetylornithine transaminase protein |
|---|
| Protein accession | YP_562065 |
|---|
| Protein GI | 91792414 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4992] Ornithine/acetylornithine aminotransferase |
|---|
| TIGRFAM ID | [TIGR00707] acetylornithine and succinylornithine aminotransferases
[TIGR03246] succinylornithine transaminase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATCA GCAGAAGTTT ATTCGATGAA GTGATGGTTC CTAACTATGC GCCATCGGCG
ATCATTCCCG TTAAAGGCGA AGGCTCACGT ATCTGGGATC AGCAAGGACG TGAATTTGTC
GATTTCGCTG GTGGTATTGC GGTTAACTGC CTAGGCCACT GTCACCCTGT ATTGGTTAAT
GCCTTAACCG AGCAAGCCAA CAAGTTATGG CATTTATCCA ACACCATGAC CAATGAGCCT
GCATTGATGC TAGCTAAAGC GCTGGTGGAT AACACGTTCG CCGAGAAAGT GTATTTTGCC
AACTCAGGTG CTGAATCAAA CGAAGCGGCA CTTAAATTGG TTCGCCGCGT GGCACTGAAC
AACTATGGCC CGCATAAATC GCAAATCATC GCCTTTAAGC AAGCTTTCCA TGGCCGCACC
TTATTTACCG TATCAGTGGG CGGTCAAGCG GCTTATTCTG ACGGCTTTGG TCCTAAGCCT
GGTGATATTG ACCACGCTGA ATACAACAAT TTAGACAGTG TTAAAGCGCT GATTTCTGAC
AACACCTGCG CCGTGGTACT TGAGCCATTA CAAGGCGAGG GCGGCATTAT TTCGCCAACC
CCAGAATTCA TTCAAGGTGT GCGTGAATTA TGTGACAAGC ACAATGCCTT ATTAGTGTTT
GACGAAGTAC AAACCGGTGT TGGCCGTACG GGCGAGCTTT ATGCCTACAT GGGCTTAGGC
GTAGTGCCTG ACGTATTAAC TACGGCTAAA GCCTTAGGTG GCGGCTTCCC TATTGGCGCC
ATGTTAACTA CCACTGAGAT TGCTAAGCAT CTTGTTGTCG GCACTCACGG CAGCACCTAT
GGCGGTAACC CATTGGCTTG TGCAGTAGGC CTTGCGGCAT TCAATACGGT GAACACTAGC
GCAGTGCTCG ATGGCGTAAA AGAGCGTGAG CAGTGGTTCC GTGAAGGTAT CAACGCCATT
AACGATAAAT ATAAAGTATT TAGCGAAGTG CGCGGTAAAG GCTTGTTACT CGGCGCTGTG
CTTAATGCCG ATTACGCCGG TAAGGCCCGT GAGTTTATGC TCGCCGCCGC CGATGAAGGC
TTGTTGGTAT TGATGGCTGG GGCAAACGTT GTGCGCATGG CGCCATCACT TGTGATCCCC
AAAGAAGATG TGTCACAAGG TCTTGCCCGT TTTGAGCGCG CTGTGGCTAA AGTCGTTGCA
GCGGCTAAAG CAGTTTAA
|
|---|
| Protein sequence | MQISRSLFDE VMVPNYAPSA IIPVKGEGSR IWDQQGREFV DFAGGIAVNC LGHCHPVLVN
ALTEQANKLW HLSNTMTNEP ALMLAKALVD NTFAEKVYFA NSGAESNEAA LKLVRRVALN
NYGPHKSQII AFKQAFHGRT LFTVSVGGQA AYSDGFGPKP GDIDHAEYNN LDSVKALISD
NTCAVVLEPL QGEGGIISPT PEFIQGVREL CDKHNALLVF DEVQTGVGRT GELYAYMGLG
VVPDVLTTAK ALGGGFPIGA MLTTTEIAKH LVVGTHGSTY GGNPLACAVG LAAFNTVNTS
AVLDGVKERE QWFREGINAI NDKYKVFSEV RGKGLLLGAV LNADYAGKAR EFMLAAADEG
LLVLMAGANV VRMAPSLVIP KEDVSQGLAR FERAVAKVVA AAKAV
|
|---|
| |