| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1049 |
|---|
| Symbol | |
|---|
| ID | 4017556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 1201196 |
|---|
| End bp | 1202005 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637955041 |
|---|
| Product | integrase catalytic subunit |
|---|
| Protein accession | YP_562060 |
|---|
| Protein GI | 91792409 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2801] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTCA GTAAGTCAGG CTATTACGAT TGGCATAAAC GCCCTACAAA TGTGATAAGC
CTTGAAACAT TGAAGCTTTA TCGCCTTGTT CGACAGCTAT TTAAGCAAAG TCGAGGCAGC
TTAGGGAATC GTGAAATGGT GAAGAAATTG CGCAAGGAAG GCTACCAGGT TGGTCGCTAT
CTCGTTCGTA AAATTATGCA CCGCCTTCGA CTCAAAGCTA CCCAGCGACG AGCTTACAAG
GTGACGACAC AGCGAAAACA CTCTGATGCA GTGGCTGATA ATCTGTTAAA CATGAACTTT
AACCCAGTAT CCGCAAATCA GGTTTGGGCA GGTGACGTGA CCTATTTAAA GACAGGTGAA
GGCTGGATGT ACTTGGCAGT GGTAATGGAT TTATATTCAC GCCGGATTGT TGGATGGCAC
ATAGACAAGC GTATGACCAC GGATTTGATA TCTAAGGCAT TAATGAAAGC CTACAACCTG
CGTCAACCGG CCAGAGGGCT GGTATTTCAC AGTGACCGAG GCTCACAGTA TACCAGCAAG
CAATTCGGTA AGCTGCTATC GAGCTATGGT ATCCGAGCCA GTATGGGGGA TGTGGGTGCG
TGTTGGGATA ATGCCGTCGT TGAACGTTTC TTTGGTAGTT TGAAACACGA TTGGATTTTT
AAAGTTGCTC AACCAACAAG GGAGTTTATG AAGCAAGATG TGACTGCTTA CATGAAATAT
TACAACTTGG AGCGACTTCA TTCTGCTAAT GGTGATCTGT CACCTGTAGA ATTTGAAAAT
TCTCAACTAA AAGTGTCCAA TTTGGGTTGA
|
|---|
| Protein sequence | MSVSKSGYYD WHKRPTNVIS LETLKLYRLV RQLFKQSRGS LGNREMVKKL RKEGYQVGRY
LVRKIMHRLR LKATQRRAYK VTTQRKHSDA VADNLLNMNF NPVSANQVWA GDVTYLKTGE
GWMYLAVVMD LYSRRIVGWH IDKRMTTDLI SKALMKAYNL RQPARGLVFH SDRGSQYTSK
QFGKLLSSYG IRASMGDVGA CWDNAVVERF FGSLKHDWIF KVAQPTREFM KQDVTAYMKY
YNLERLHSAN GDLSPVEFEN SQLKVSNLG
|
|---|
| |