| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1047 |
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| Symbol | |
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| ID | 4017554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1197760 |
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| End bp | 1199262 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637955039 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_562058 |
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| Protein GI | 91792407 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGGTCA TTAATCTGCT TTTGTTAGTC ATAACAGGGT TAACCGCTGT ATTTATGATT
GCCGCTTGTG TTTGCTTATT ATTTTTACGC CGCCAGATGG TTTTTTTATC CAGCTTGACC
CAAGTCATCG AGTCATTAAA AACTGAGGAT AAACTGCTTA AATTTGACAC TGTGCCTGTC
TTGTTTCATC CACTAGTGCG GGCATTGCAA CAACTCTTAC AGCTCTCTCC TTTTTCCATC
GAACATGACA AGCTGACTGG GCTTGCCAAT CGAGTCGGCT TTAAACGCTA CCTAAAACAG
CAACTTCCTG TTAAAACTGG CATGCTAGTC TTAGTTGATA TTCAACGATT TCGCTTTGTA
AATAACTTGT TTGGCTTCGC CTTTGGTGAT TTGCTGCTGC AAGACTTCGC CAAAAGAGTC
ACATCTCTTA ACCCCAGTCC TGATTTTGTA TCGCGCATGA ACGGCGATGA GTTCTTGCTA
TTTTATAAAA ATGAGCTCAG CCCTGAGAGT TTGCTCATCA TAAAGCAAAA CTTACAAAGG
GCGTTTGTCA TAGAGAAAAC GCCCATTAGC GTGAAAATGC AACTGGGTGT GTTAGAACTC
AGCCATCATA ATGCCGACAT GAGCCTAATG TTGAGGCGTT TAGATCTGGC GTTGAAAAAA
GCCAAGCAGA GTAAGAATGC CATGGCTTAT TACCAACAAG ATGACGATAA GGTGCAGTAT
CGAGAGCTGC TCATCATCAA CTCATTGCCC AAAGCCTTAT TAGAAGGCCA GTTGCACTTG
GTATATCAAG CCAAACTCGA TTTACATACT GGTAACTGTC AACAAGTGGA AGCGCTTATT
CGTTGGCAAC ACCCAAGCCT TGGCAAGCTG TCTCCTGCTG AATTTATCCC CTTAGTGGAA
TATGCTGGCA TGATAGAGCT CATCAGCTTT TGGGTGTTAG ATAAAGTATT AGCCCAACAA
GCCGCTTGGC AAGCCCAAGG AATGCAGGTC AAGGTGGCGG TCAATCTCTC CACCACGGAC
ATAGATAACC CCCAATTGGC TGAGGAAATC AGCGCCAAAC TTAAGCATTA TCAAGTGCCT
GCAGCGAACT TAATGATAGA GATGACTGAA AGCGTATTAA TGGCCGATCT CGAACGCACC
ATTAGCTGCT TAGAAGCCCT TAGAAAGATA GGCGTGAAAC TCGCCATCGA TGACTTCGGT
ACAGGTCACT CATCGCTAGC GTATCTGAGA TTCTTACCTG TGGATGAAGT TAAAATCGAT
AAGGCTTTTT TGGAGGATTT TGACTCGGAT AATAGAAGTA AACAATTGAT TAAGAGTAGT
ATAGAATTGG CAAAAAATTT AGGCTTTGAA GTCACGGTCG AAGGGGTCGA GTCTAAAACA
GTACTTGAGC AGCTTAAAAG TTTTGGCGTC GATACCATTC AAGGTGATTA TTACGCTAAG
CCCCTTGAGC CCGAGGCGTT TCAAACCCAA TTCATTACCT TGAATCAGCA ATTAAGCCAT
TAA
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| Protein sequence | MSVINLLLLV ITGLTAVFMI AACVCLLFLR RQMVFLSSLT QVIESLKTED KLLKFDTVPV
LFHPLVRALQ QLLQLSPFSI EHDKLTGLAN RVGFKRYLKQ QLPVKTGMLV LVDIQRFRFV
NNLFGFAFGD LLLQDFAKRV TSLNPSPDFV SRMNGDEFLL FYKNELSPES LLIIKQNLQR
AFVIEKTPIS VKMQLGVLEL SHHNADMSLM LRRLDLALKK AKQSKNAMAY YQQDDDKVQY
RELLIINSLP KALLEGQLHL VYQAKLDLHT GNCQQVEALI RWQHPSLGKL SPAEFIPLVE
YAGMIELISF WVLDKVLAQQ AAWQAQGMQV KVAVNLSTTD IDNPQLAEEI SAKLKHYQVP
AANLMIEMTE SVLMADLERT ISCLEALRKI GVKLAIDDFG TGHSSLAYLR FLPVDEVKID
KAFLEDFDSD NRSKQLIKSS IELAKNLGFE VTVEGVESKT VLEQLKSFGV DTIQGDYYAK
PLEPEAFQTQ FITLNQQLSH
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