| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1019 |
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| Symbol | |
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| ID | 4016587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1164035 |
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| End bp | 1166140 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637955011 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_562030 |
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| Protein GI | 91792379 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000461081 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTCACG TGAATCCAAT TGTAAAGAGT TTTGAGTATG GTCAACATAC AGTCACCTTA
GAAACAGGTG TTATTGCACG TCAAGCAGAT GCTGCAGTTT TAGCAAGCAT GGGCGATACC
ACAGTACTAG TTACTGTTGT TGGTAAAAAA GTAGCGGATT TAAGCCGTGA CTTCTTCCCG
CTAACTGTTA ACTATCAAGA AAAAACCTAC GCTGCGGGTA AAATTCCTGG CGGTTTCTTC
AAACGTGAAG GTCGTCCATC AGAAGATGAA ACTCTGATTG CACGTCTTAT TGACCGTCCT
ATTCGTCCTT TATTCCCTAA CGGTTTTAAA AACGAAGTTC AAGTTATCAT CACTGTGGTT
TCTGTTGACC CACAAATCGA GCCAGATATT ATTTCGATGA TAGGTACTTC TGCGGCCTTA
GCTATTTCTG GTATTCCATT CAGCGGCCCA CTAGGTGCGG CGCGTGTGGG TTATATCAAT
GGCGAATACC TACTTAACCC AACAGTTGAC CAGCTTGCAA CAAGCTCACT TAACTTAGTG
GTAGCAGGTA CTAAAGCTGC GGTTCTTATG GTTGAATCTG AAGCCAAAGC CCTTGCAGAA
GAAATCATGC TAGGCGCGGT AACTTACGGT CACGATCAAC AACAAGTGGT TGTCGATGCG
ATTGCTGAAT TTAAAGCAGA AGCTGGCAAG CCAACGTGGG ATTGGACTGC ACCAGTTCAA
GATCAAGCGT TAGTCGCAAA AATCAAAGAG CTTGCAGAAG CTGGCATGAC AGATGCGTAC
CAAATTGAAG TTAAGCAAGA CAGATATGTT CAAGTCGGTG TTGTTAAAGC TGCTGCAAAA
GCGGCATTAG TTGCTGAAAA TCCAGATGTT GATACTCGTG AAGTAGATAA CTTATTGGGT
AGTCTAGAGA AAAACGTAGT ACGTAGCCGC ATCATCGCGG GTAAGCCACG TATCGACGGC
CGCGAACCAG ACATGATCCG TGCGTTGAAC GTATTAGCAG GCGTACTGCC ACGTACTCAC
GGTAGTTCAT TGTTTACCCG TGGTGAAACT CAGGCATTAG TGACTTGTAC GTTAGGTACT
GAGCGTGATG CACAGAAGAT TGACAGCATC ATGGGTGAGC GTACTAACCG CTTCATGCTT
CACTATAACT TCCCTCCATA CTCTGTTGGT GAAACAGGCA TGGTAGGTTC ACCTAAGCGC
CGCGAAATCG GTCATGGTAA GTTAGCGTGG CGCGGTATGA ATGCCGTTAT GCCTACAGCT
GAAGAATTCC CATACAGCAT CCGCGTAGTA TCAGAGATTA CTGAATCAAA TGGTTCAAGC
TCTATGGCTT CTGTTTGTGG TACTTCATTA GCATTGATGG ATGCCGGCGT ACCAATCAAG
ACTTCTGTTG CTGGTATTGC AATGGGTCTA GTTAAAGAAG GCGACGATTT CGTTGTACTT
TCTGACATTC TAGGCGACGA AGATCATTTA GGTGACATGG ACTTTAAAGT TGCTGGTACT
CGTGATGGTA TTACTGCTCT GCAGATGGAT ATCAAAATCG AAGGCATCAC TAAAGAAATC
ATGGATATCG CACTGCAACA AGCTTATGGC GCACGTGTTC ATATCCTAAA CGTGATGGAC
CAAGCGATTG GCACGCATCG TGGCGATATC TCTGCACATG CTCCACGCAT CACCACAATC
AAGATCAACC CAGAGAAAAT CCGTGATGTT ATTGGTAAAG GCGGCGCGGT AATTCGTGCA
CTTACCGAAG AAACTGGCAC GACTATCGAG CTTGATGATG ACGGTACTGT GAAGATTGCC
TCTTCAAACG GTGAAGCGAC TAAAGAAGCT ATCCGCCGTA TCGAAGAAAT TACCGCTGAA
GTTGAAGTGG GTCGTGTCTA CAACGGTAAA GTTATCCGTA TCGTAGATTT CGGTGCCTTC
ATTAACATTC TTCCTGGTAA AGATGGTTTA GTTCACATTT CACAGATCAG TGATGAGCGC
GTTGCTAACG TGTCAGATCA TCTTGAAATG AACCAAGACG TTAAAGTTAA GGTCATGGAA
GTGGATCGTC AAGGCCGCGT AAGATTGTCT ATCAAAGAAG CACAAGAGAA AGTGGCTGCT
GAATAA
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| Protein sequence | MGHVNPIVKS FEYGQHTVTL ETGVIARQAD AAVLASMGDT TVLVTVVGKK VADLSRDFFP
LTVNYQEKTY AAGKIPGGFF KREGRPSEDE TLIARLIDRP IRPLFPNGFK NEVQVIITVV
SVDPQIEPDI ISMIGTSAAL AISGIPFSGP LGAARVGYIN GEYLLNPTVD QLATSSLNLV
VAGTKAAVLM VESEAKALAE EIMLGAVTYG HDQQQVVVDA IAEFKAEAGK PTWDWTAPVQ
DQALVAKIKE LAEAGMTDAY QIEVKQDRYV QVGVVKAAAK AALVAENPDV DTREVDNLLG
SLEKNVVRSR IIAGKPRIDG REPDMIRALN VLAGVLPRTH GSSLFTRGET QALVTCTLGT
ERDAQKIDSI MGERTNRFML HYNFPPYSVG ETGMVGSPKR REIGHGKLAW RGMNAVMPTA
EEFPYSIRVV SEITESNGSS SMASVCGTSL ALMDAGVPIK TSVAGIAMGL VKEGDDFVVL
SDILGDEDHL GDMDFKVAGT RDGITALQMD IKIEGITKEI MDIALQQAYG ARVHILNVMD
QAIGTHRGDI SAHAPRITTI KINPEKIRDV IGKGGAVIRA LTEETGTTIE LDDDGTVKIA
SSNGEATKEA IRRIEEITAE VEVGRVYNGK VIRIVDFGAF INILPGKDGL VHISQISDER
VANVSDHLEM NQDVKVKVME VDRQGRVRLS IKEAQEKVAA E
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