| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1017 |
|---|
| Symbol | |
|---|
| ID | 4016585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1160693 |
|---|
| End bp | 1161439 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637955009 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_562028 |
|---|
| Protein GI | 91792377 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3821] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.112148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAATTA CATTTCTCGA TGGTTTGGCG TTATTTTGCT TTATAGGCTC TTGGTTGGGC
TATACGTTTT TTGCCAGAAA GAAAGCAAAG AACACTAACT GTATTGCACG CTGTCTGCAC
CAGCATAGGA TCCATTGGAT GAGGATGCTG ATGACGAAGG ACATCAGAGT CAGTGAAGTG
GCATTATTGG CAAATTTGGA GCGCAATATT GCGTTTTTTG CCTCAACCAC CTTGCTGGTG
CTCGCTGGCG TATTGACGTT ATTTGCTCAA GTCGACCAAG TAGAGGAGGT GATAGGCTCT
ATTCCTTACT CGGCTAAAGC CGATCATGCA CTCATGCAAG CAAAGCTTGC CTTATTAGCA
GGAATATTTG TGATGGCATT TTTTCAGTTT ACTTGGTCTA TGCGGCAGTA TGGCTTTTTG
AATGTGATGA TAGGCGCAGC ACCGGTAGAT AAAGATGGCA AGAATGAGTC GTTAAAAGCT
TATGCCAAGC AGATGGCCAC AGTGCAAGAT CAGGCGGCAC ACTCCTACAA TTATGGCTTG
AGATCTTACT ATTTTTCCAT TGCGGCACTG TGTTGGTTTT TCCACTCTTG GTTGCTCATA
GCCGCCAGTT TATTCGTGGT TTATACCTTG TATCATCGTG AATTTAAATC TAAGGCCGTG
GTGGCCATTA CTGCCGCTCA AGGACATTTA GAGCAGTATA TGGCATCGAA TAATCACGAT
GTGCTTAAAG ATGAACCGAA AGTCTAG
|
|---|
| Protein sequence | MTITFLDGLA LFCFIGSWLG YTFFARKKAK NTNCIARCLH QHRIHWMRML MTKDIRVSEV
ALLANLERNI AFFASTTLLV LAGVLTLFAQ VDQVEEVIGS IPYSAKADHA LMQAKLALLA
GIFVMAFFQF TWSMRQYGFL NVMIGAAPVD KDGKNESLKA YAKQMATVQD QAAHSYNYGL
RSYYFSIAAL CWFFHSWLLI AASLFVVYTL YHREFKSKAV VAITAAQGHL EQYMASNNHD
VLKDEPKV
|
|---|
| |