| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1014 |
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| Symbol | |
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| ID | 4016582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1156936 |
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| End bp | 1157625 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637955006 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_562025 |
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| Protein GI | 91792374 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACCGA CAATGACATC CACAGCAATT GATACTTTTA TCGCGCCGCC CTGTTTAGCA
CAGATTCAAA TTCTATATGA AGATGAGGCG ATATTAGCCA TCGATAAACC TAGCGGCTTA
TTAAGTTTGT CGGGTAAAAA TCCACTGAAT TTAGATTCGG TGCATTATCG GTTAGTGCAA
GATTTTGCCG ATGCACGTTT ATTGCATCGC CTCGATTTTG GTACCTCTGG GATCATTTTG
GTGGCGCGGA ATAAACACAT TAATGGCTTA TTGACCCAGC AATTTCAAAA TAGAAGCGTG
ACTAAAACTT ATCAAGCGCT ATTAATGGGC AAGCTCAGCA CCGACAGCGG GGTGATCGAT
GCCCCCATTG CTAAAGATGC AGCGCTGTTT CCACGGCTTA AAATATGTGA ACTTGAGGGT
AAAAGTGCGA TGACTGAGTA CAAAGTGCTA AGTTATTGTG AGCAGACTGA CCTAAGCCGA
GTGCAATTTA CGCCGATAAC TGGACGTACG CATCAGCTTA GGCTGCACAG TCAGCACCTA
GGTCATCCTA TTTTGGGCTG CGATCTCTAT GGCGGCATAG TTGATGGAAG AGAGCCGGTT
TCTAGGATGA TGCTCCATGC GCAATCACTG GCGTTCACTC ACCCGTTAAC GGGGGGGGAC
ATGCAAATTA ACTGCCCTTG TCCATTTTAA
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| Protein sequence | MTPTMTSTAI DTFIAPPCLA QIQILYEDEA ILAIDKPSGL LSLSGKNPLN LDSVHYRLVQ
DFADARLLHR LDFGTSGIIL VARNKHINGL LTQQFQNRSV TKTYQALLMG KLSTDSGVID
APIAKDAALF PRLKICELEG KSAMTEYKVL SYCEQTDLSR VQFTPITGRT HQLRLHSQHL
GHPILGCDLY GGIVDGREPV SRMMLHAQSL AFTHPLTGGD MQINCPCPF
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