| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1006 |
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| Symbol | nusA |
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| ID | 4016573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1145078 |
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| End bp | 1146577 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637954998 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_562017 |
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| Protein GI | 91792366 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.614883 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAAG AAATCCTGCT AGTCGCAGAG GCAGTTTCTA ATGAAAAAGC CGTACCCCGC
GAAAAAATAT TTGAAGCGCT AGAAATTGCA CTAGCTACAG CAACCAAGAA AAAGTACGAA
GGTGACATCG AGGTTCGTGT TGCTATCGAT CGTAAAACGG GTCACTACGA CACTTTCCGT
CGTTGGATGG TGGTTGACGA TCAAGGTGAA GCATTAGAAA ATCCGTACAG TGAAATCACC
TTAGAAGCGG CCCGTTACGA AGAGCCAGGC ATAGAGCCTG GTCAATACAT AGAAGACCAA
ATTGATTCTG TGGTTTTTGA CCGTATTACG ACCCAAACCG CGAAGCAAGT CATAGTACAA
AAAGTACGTG AAGCAGAGCG CGCCCAAGTT GTAGAACAGT TCATCGAAAA AGAAGGTGAG
ATTGTTACTG GTATTGTTAA GAAAAGCAGC CGTGAAAACG TGGTTGTCGA CTTAGGTAAC
AATGCTGACG GCGTGCTGTT CAAAGAAGAT TTGATCAGCC GTGAGTCTTT CCGTCCAGGT
GACCGCGTTC GCGCATTACT TTACTCAGTC CGTCCTGAAG CACGCGGCGC GCAGTTATTT
TTAACTCGCT CTAAGCCTGA AATGCTGATC GAACTGTTCC GTGTTGAAGT GCCTGAAATA
TACGACGAGA TGATCGAAAT CATGGGCGCA GCTCGTGATC CTGGTGCTCG CGCTAAGATA
GCCGTTAAGT CTAACGATAG ACGTATCGAC CCTATCGGTG CTTGTGTGGG CATGCGCGGC
GCACGTGTTC AAGCCGTTTC TAACGAGCTT GGCGGTGAGC GTGTTGATAT CGTGTTGTGG
GATGAGAATC CAGCGCAATA TGTGATCAAT GCCATGGCAC CAGCCGATGT GGCTTCTATC
ATAGTCGACG AAGATAACCA TTCTATGGAT ATCGCCGTTG AAGCCGATAG TTTGGCACAA
GCCATTGGTC GAAATGGACA AAACGTACGT TTAGCGACTC AGCTTACCGG CTGGGAACTG
AACGTAATGA CAGTGGAAGA CATGAATAAG AAGCACCAGG CAGAAAGTGC CAAGGTGATC
GACTTATTCG TGAGCGCCCT GGAAGTGGAT ACTGACTTTG CAACTGTGCT TGCAGAAGAA
GGCTTCACTT CATTAGAAGA AATCGCTTAC GTACCAGAAG CGGAATTACT AGCTATCGAT
GGTTTTGATA GTGACATAGT AGAAACATTA CGTGAACGTG CAAAAGCGGC TATTTCTACC
CGTGCATTAG CCACGGAAGA AGCATTAGAT GGCGCTGAGC CAAGTGAAGA TTTATTAGCA
TTGGAAGGGT TGGAAAGGCA TTTAGCTTAT GTTCTAGCGA GCAAAGGCGT TGTGACTTTA
GAAGACCTAG CCGAACAAGG CATAGACGAT TTGATCGAAA TTGAAGAATT AACAGAAGCA
AAAGCAGGTG AGCTCATCAT GGCGGCCCGC AATATCTGTT GGTTTGGCGA AGAAGCATAA
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| Protein sequence | MNKEILLVAE AVSNEKAVPR EKIFEALEIA LATATKKKYE GDIEVRVAID RKTGHYDTFR
RWMVVDDQGE ALENPYSEIT LEAARYEEPG IEPGQYIEDQ IDSVVFDRIT TQTAKQVIVQ
KVREAERAQV VEQFIEKEGE IVTGIVKKSS RENVVVDLGN NADGVLFKED LISRESFRPG
DRVRALLYSV RPEARGAQLF LTRSKPEMLI ELFRVEVPEI YDEMIEIMGA ARDPGARAKI
AVKSNDRRID PIGACVGMRG ARVQAVSNEL GGERVDIVLW DENPAQYVIN AMAPADVASI
IVDEDNHSMD IAVEADSLAQ AIGRNGQNVR LATQLTGWEL NVMTVEDMNK KHQAESAKVI
DLFVSALEVD TDFATVLAEE GFTSLEEIAY VPEAELLAID GFDSDIVETL RERAKAAIST
RALATEEALD GAEPSEDLLA LEGLERHLAY VLASKGVVTL EDLAEQGIDD LIEIEELTEA
KAGELIMAAR NICWFGEEA
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