Gene Sden_0987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0987 
Symbol 
ID4016757 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1125569 
End bp1126795 
Gene Length1227 bp 
Protein Length408 aa 
Translation table11 
GC content45% 
IMG OID637954977 
ProductNa(+)-translocating NADH-quinone reductase subunit F 
Protein accessionYP_561998 
Protein GI91792347 
COG category[C] Energy production and conversion 
COG ID[COG2871] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF 
TIGRFAM ID[TIGR01941] NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00101326 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAGAAG TCTATCTAGG TGTTGGTATG TTCACCGCCA TTGTCTTAGT CTTAGTCTTA 
GTGATTCTAT TCGCTAAATC TAAGCTAGTG GCAAGTGGTG ATATCATCAT TGGCATCAAT
GGTGATGCAG ATAAAGCGAT TACAACAGGC GCGGGTGGCA AGCTACTTAG TGTGTTAGCT
GACAACGGTA TTTTCGTGTC AAGTGCCTGT GGTGGCGGTG GCTCTTGTGG TCAGTGTCGC
GTGAATATTA AGTCTGGTGG TGGTGATATT CTGCCAACCG AACTTGATCA CATCAGCAAG
GGTGAAGCCC GCGGCGGTTG TCGTCTTTCA TGTCAGGTTA ACGTTAAATC TGATATGGAA
ATTGAACTTG ATGAAGAGAT TTTCGGCATC AAGAAGTGGG AATGTGACGT TATTTCTAAC
GATAACAAAG CCACCTTCAT TAAAGAACTT AAGCTACAGA TCCCAGATGG TGAATCTGTG
CCGTTCCGCG CCGGTGGTTA TATTCAGATT GAAGCCCCTG CTCACCATGT GAAATATGCT
GATTTCGACG TACCAGCAAA ATACCGTGGC GATTGGGAAC ATTTTGGTTT CTTTAAACTT
GAGTCAAAAG TTGATGAAGA AACCATTCGT GCATACTCTA TGGCTAACTA CCCAGAAGAG
TTTGGCATCA TAATGCTAAA CGTGCGTATT GCTACGCCGC CACCACGTAA CTTAAGCCTG
CCTTGTGGCA AGATGTCTTC GTACATCTGG AGCTTAAAAG CGGGTGATAA AGTGACAATT
TCTGGTCCAT TTGGTGAGTT TTTTGCCAAA GATACTGACG CAGAAATGGT ATTTATCGGT
GGTGGTGCGG GTATGGCACC AATGCGTTCA CACCTTTTCG ATCAGCTCAA GCGTCTTAAG
TCTAAGCGTA AGATGAGTTT CTGGTACGGC GCGCGCTCTA AGCGTGAGAT GTTCTATGTG
GAAGATTTTG ACGGCCTAGC GGCTGAGAAC GAAAACTTCC AGTGGCACGT TGCTCTGTCA
GATCCACAAG CCGAAGATGA ATGGACTGGT TACACAGGTT TCATTCATAA CGTATTGTAT
GAAAACTACT TACGTGACCA CGATGCACCA GAAGATTGTG AATTCTACAT GTGTGGTCCA
CCTATGATGA ATGCGGCTGT GATCAGCATG CTTAAAGATC TGGGTGTTGA AGATGAAAAC
ATCTTATTGG ATGACTTTGG CGGTTAA
 
Protein sequence
MLEVYLGVGM FTAIVLVLVL VILFAKSKLV ASGDIIIGIN GDADKAITTG AGGKLLSVLA 
DNGIFVSSAC GGGGSCGQCR VNIKSGGGDI LPTELDHISK GEARGGCRLS CQVNVKSDME
IELDEEIFGI KKWECDVISN DNKATFIKEL KLQIPDGESV PFRAGGYIQI EAPAHHVKYA
DFDVPAKYRG DWEHFGFFKL ESKVDEETIR AYSMANYPEE FGIIMLNVRI ATPPPRNLSL
PCGKMSSYIW SLKAGDKVTI SGPFGEFFAK DTDAEMVFIG GGAGMAPMRS HLFDQLKRLK
SKRKMSFWYG ARSKREMFYV EDFDGLAAEN ENFQWHVALS DPQAEDEWTG YTGFIHNVLY
ENYLRDHDAP EDCEFYMCGP PMMNAAVISM LKDLGVEDEN ILLDDFGG