| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0961 |
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| Symbol | |
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| ID | 4016563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1100405 |
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| End bp | 1102129 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637954951 |
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| Product | TrkA-C |
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| Protein accession | YP_561972 |
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| Protein GI | 91792321 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAAC TTTGGCTGTT AACAGCAATT TTAGTTGCCT TGGTGGCTGG GCTTGTTAGC
GGCCGCGCCA ATCCCGCGAG TTTGTTTTTT TTCGCGGGGC TGGCAAGCTA TTTATTAGGT
TTAGTGAGTT TAGATACTGC CCTAGCAGGC TTTACTAATA ATGGTTTGAT CACGCTGGTG
TTATTGGTGC TCGCCGCCAC AGCCCTTGAG AAAACCTCAT TGCTGGGTAA ACTCAGCCAA
GCCATTAGTA AGGGGTCGCT AACCTTGACC TTGGCTAAAC TTGGGGTTTC TACCGCTGTG
TTGTCGTCTT TTACTAACAA TACTGCTGTG GTGGCCTCGT TAATTGGTGT GGTACGGCGC
AATCAGGCGC ATGCGCCCAC TAAGTTATTA TTGCCATTAA ATTATGCTGC CATTTTAGGC
GGCACCTTAA CCCTAATTGG CACCTCGACA AACTTAATCG TTAACTCCTT CGTCGAAAAC
GCTGGCCTTA AGCCATTAGG CTTTTTCGAG TTCACTTCGG TTGGCATCAT AGTCGTGATA
TCGGGTTTGC TGCTACTTAT TCCGCTGGCC CATCTATTGC CTGATAGGCG CGATGAGACA
GATGATGAAG CCTTGCCTTA TTTGCTTGAG GCTCACATTG CTAAAAATTC AAAGTTAGTG
GGCAAAAGCG TGCAAGACAA CCGCTTGCGC GCCTTAAAAA AATTGTATTT AGTCGAACTT
GAGCGTAGCG GCATTCGAAT TTGCCCTGTA CCGCCGCAAT TAGTCTTGCA AGCCGATGAT
GTATTGCGCT TTAGTGGCGC TGTGGAGTCG GTGGAGTTAT TGCATCAGTT CGATGGCCTC
AATTGGTTTG GCAAGCAGCA AGCCAAAGGG CAGAATTTGA TTGAAGCCGT GTTAGCGCCA
TCCTCCTCCT TGGTGGGCAC TAGCCTTAAA GACTCGCGTT TTCGTGAAGA ATTCGATGCC
GCCGTGATGG CCATTCGCCG TGGTCATCAG CCATTAAAGG GCGGCCTTGG GGATATCGAA
CTGCAACCCG GTGACGTGTT ATTGCTAACC CCTGGGGACA GTTTTACCAA GAAGCCACGC
CTCGCCGATG ATTTTGCCGC CATAAGCGGG CTAGATTTAA GCGTGCGTTT AGATAACAAG
CGCGGTCATT GGGTATTATT TGGCTTTGCG CTAACCATTA TCGCAAGTAT TGCTGGGATC
ATCCCTTTAG CCAAAGGCTT AGTGGTGTTG CTGCTGAGTT TTCTGGCCAT AGGCGCAGTG
ACTGTCAGCG AGCTTAAACG CCGCTTCCCA CTAGAATTAG TGGTGATTGT TGGCAGTGCC
TTGGGGCTTG CCAACTTGAT GATAAGCACA GGGCTTGCGG ATGTGATGGC TCAAGGTTTG
CTGGAAGTAT TTGACGGTTA CGGGGTGTTT GCCGCCTTTG TGGGTGTGTA CTTGATGACA
GTTATCGTCA CTGAAATCAT TACCAATAAT GCCGCCGCGG CCTTGTCGTT CCCCGTCGCC
TATGCCTTAG CCATGAGTTA CGGCGTCGAC CCTAGGCCTT TTATTATGGC CGTGGTGTTT
GGTGCCAGTG CCAGCTTTAT TTCACCCTAT GGTTATCAGA CCAACTTAAT GGTGTTTAAT
GCCGGTAATT ACCAGTTTAG TGATTTTGTA CGCTTAGGCT TGCCTTTGTC CTTAGTGTAC
TCGGCAGCGG TAATTATTGC CGTGCCTTAC TTTTTCCCGT TTTAG
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| Protein sequence | MSELWLLTAI LVALVAGLVS GRANPASLFF FAGLASYLLG LVSLDTALAG FTNNGLITLV
LLVLAATALE KTSLLGKLSQ AISKGSLTLT LAKLGVSTAV LSSFTNNTAV VASLIGVVRR
NQAHAPTKLL LPLNYAAILG GTLTLIGTST NLIVNSFVEN AGLKPLGFFE FTSVGIIVVI
SGLLLLIPLA HLLPDRRDET DDEALPYLLE AHIAKNSKLV GKSVQDNRLR ALKKLYLVEL
ERSGIRICPV PPQLVLQADD VLRFSGAVES VELLHQFDGL NWFGKQQAKG QNLIEAVLAP
SSSLVGTSLK DSRFREEFDA AVMAIRRGHQ PLKGGLGDIE LQPGDVLLLT PGDSFTKKPR
LADDFAAISG LDLSVRLDNK RGHWVLFGFA LTIIASIAGI IPLAKGLVVL LLSFLAIGAV
TVSELKRRFP LELVVIVGSA LGLANLMIST GLADVMAQGL LEVFDGYGVF AAFVGVYLMT
VIVTEIITNN AAAALSFPVA YALAMSYGVD PRPFIMAVVF GASASFISPY GYQTNLMVFN
AGNYQFSDFV RLGLPLSLVY SAAVIIAVPY FFPF
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