| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0945 |
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| Symbol | |
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| ID | 4016890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1081251 |
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| End bp | 1082855 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637954935 |
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| Product | amino acid/peptide transporter |
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| Protein accession | YP_561956 |
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| Protein GI | 91792305 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.985856 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCACCA CACTATCAGA TGCTGAACGC CACGCCAACA TGCAGCAGGA CACCTTTTTA
GGCCACCCCA AGGGGCTGTT CGTGTGTTTT TTCACCGAGA TGTGGGAGCG TTTTTCCTTC
TACGGCATGA AAGCCCTGCT GTTTTTATAC CTGATCAAAT ACCACCTGTT TACCGATGAA
CAAGGCTACA ACCTTATCGG GGCTTATGGT GCCCTCGTCT ATGCCGTGCC TGTGGTGGGT
GGTTTATTAG CCGACCGCTA TTTAGGCATG CGCAAGGCGG TCATATTCGG CGCCTGTTTG
CTGGTGCTCG GCCACCTAGG CATGGCATTT GAAGGCCACC AAGCGGCCCG AGTCGCTGGG
GAAGTGGTGC GTGATGAAGG TGCCTTGCAA GTATTTTACT TCTCTTTGGC GTTAATTATC
ATGGGGGTGG GCTTCTTAAA ACCCAATATA TCCACCATAG TCGGTCAACT CTACCCGCCG
CAGGATCCCA AACGTGACTC GGGCTTTACC CTCTTCTATG CTGGAATAAA CTTAGGGGCC
ACCCTAGCGC CGCTTCTCTG TGCTTACCTT GGTGAAACCT ACGGCTGGAA ATATGGCTTT
GGTCTAGCAG GCATAGGCAT GCTGGCAGGG CTTATTGTGT TTATCCGCGG GCAAAAATAC
TTGTATGGCG TCGCCGAAGC TAATGACCCT GAAAAGCTTG CCAAAAAGCG CTTAGGCATC
AGCACAGAAG TCTGGATATA CCTAGCCGCC AGCTTAAGTG TGCTGCTTAT TTGGGGGCTT
GTTCAAACCC ACTCATTGGT GTTACAACTC AGTGAGATGT TACCCAGCGC CAGCCCAGTG
CTCTGGACCT TGCACGGCAT ATCATTAGTG CTCGCCATTG GCATAGGCTG GTTTATGCTA
AAGCATTGCA ACAAGATTGA GCGCCAGCAG ATGACGGCCT TATTGGTGTT TATTGTGGCG
GGGTTAATCT TCTTCGGCCT CTACGAGCAG ACCTACGGCT CTTGGGTCGC CTTCTCCGAT
CGCGTCATGG ACAGAAACAT GCTCGGCTTA GAATGGAGCG CCGGCCAGCT CACCTTCCTC
GGCGCCTTCT TCGTCATCTC TCTATCGCCC TTGTTTGCTT GGCTGTGGCC AAAGCTTGCA
AGTAAAGGCT TAGATCCCAG CAAACCAATA AAAGTTGCCT TAGGGATCTT ATTCGCCGGT
TTGTCATTCC TAGTGTTAGT GCTAGGCATT CAAACGCCGC TAGAAAGCGG TTTAGTCAGC
ATCTGGTATC TAGTGCTCGC TTATTTAGTG CTGGAAATTG GTGAATTGTT ATTGTCGCCC
ATAGGCCTGT CTGCGGTCAC CGAATTATCG GTCAAACGCG TGGTGAGCCT GATGATGGGC
GCTTGGTTCC TCGGCACCTC ATACTCTGAG ATTTTAGCCG CTGAGCTGAG TAAACTTGCC
GCCATTGACA CCCATGGCGG CGTGATAAGC GATATCCCAA GTGCCATGCA GCTCTATGAA
GAACTGTTTA TCTTCTCGGC CCAGATAGGC ATAGCCATGG CAGTGGTCTT CTTCGCCATC
AGCCCCTTGG TAAAAAAACT GATGCATCAG CAGGCTGCAG CTTAA
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| Protein sequence | MPTTLSDAER HANMQQDTFL GHPKGLFVCF FTEMWERFSF YGMKALLFLY LIKYHLFTDE
QGYNLIGAYG ALVYAVPVVG GLLADRYLGM RKAVIFGACL LVLGHLGMAF EGHQAARVAG
EVVRDEGALQ VFYFSLALII MGVGFLKPNI STIVGQLYPP QDPKRDSGFT LFYAGINLGA
TLAPLLCAYL GETYGWKYGF GLAGIGMLAG LIVFIRGQKY LYGVAEANDP EKLAKKRLGI
STEVWIYLAA SLSVLLIWGL VQTHSLVLQL SEMLPSASPV LWTLHGISLV LAIGIGWFML
KHCNKIERQQ MTALLVFIVA GLIFFGLYEQ TYGSWVAFSD RVMDRNMLGL EWSAGQLTFL
GAFFVISLSP LFAWLWPKLA SKGLDPSKPI KVALGILFAG LSFLVLVLGI QTPLESGLVS
IWYLVLAYLV LEIGELLLSP IGLSAVTELS VKRVVSLMMG AWFLGTSYSE ILAAELSKLA
AIDTHGGVIS DIPSAMQLYE ELFIFSAQIG IAMAVVFFAI SPLVKKLMHQ QAAA
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