| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0942 |
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| Symbol | |
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| ID | 4016887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1075356 |
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| End bp | 1076363 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954932 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561953 |
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| Protein GI | 91792302 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCCATAC CGCATACCCC AGCGCAAACA TCTCAATCCG AAGTCATTAA CACTATAAGC
TATGACATCA GTAGCAATGA CCCAAGCTTC CCTTTACCGG CGAGCCTTGC AGAAAGCTTG
CTACACACCT TAGTGTCTCA TATCGCCGAA GCCATGTTCT TGGTCAATAG TGCAGGCGTG
ATTGAGATGA TAAACCCCCA AGGGGCCAAG TTATTTGGCG CGCCAAAGGA TAAAATCGTG
GGCAAGAAAC TGTCTGAGTT TTTTTATCGG GACGCGCAGG AAGAATACGA CAACCTATTT
CAAGGTTGGC ACATGACAAC TGAAACTCAG TTAAACCATG GCCCAAAAGA GGTGTTATTA
AAGCGTAATG ATGGCCAGCC ATTAGAAGTG GATTTATCCC TCTCTTGCTT GCCTGCCAGT
GATAGCAACC CCAAAGCCGT GTTTATCGGC ATTATGCATA ACCTCAGCAG TCATAAGGCA
GAATATAAGG AGCTGCGCCG TCTCGCACGC ACAGATTCCT TAACCCAGCT GGCTAACCGT
CATGCTTTTG ATGAAGTATT ACAGCGCAAC TGGCAAGAAT GTGTCAGCCA TGGCCTGCCC
TTAAGCTTAG TGATCATAGA CGTGGACTAT TTCAAGTCAT TCAACGATGC CCACGGCCAT
GTGCAAGGGG ATGAGTGCTT AAAACGCATC GCACAGGTTA TCCAAGCTGC CCTGCCGTCT
CGCCATTGTC TGGCAGCCCG TTATGGCGGT GAAGAGTTTG CGCTAATCTT ACCCGGCTGC
AATGCCCATA TTGCAGAGGC GACGGCAATG AGAGTGCAAC AGCAAATCAA TAAACTCTCA
TTTACCGCTC AAGGGTTAGA CGCCAGCGTA AAAATAAGTG TCAGCCAAGG TATTGCCTGT
GAACGCAATG GTCAATTTAG AACTCCCACC GCACTCTTGT GTGCTGCAGA TACCGCCCTT
TATCGCGCTA AATCTGATGG CAGAGACAGA ATTAACCTAA GCCAATAG
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| Protein sequence | MSIPHTPAQT SQSEVINTIS YDISSNDPSF PLPASLAESL LHTLVSHIAE AMFLVNSAGV
IEMINPQGAK LFGAPKDKIV GKKLSEFFYR DAQEEYDNLF QGWHMTTETQ LNHGPKEVLL
KRNDGQPLEV DLSLSCLPAS DSNPKAVFIG IMHNLSSHKA EYKELRRLAR TDSLTQLANR
HAFDEVLQRN WQECVSHGLP LSLVIIDVDY FKSFNDAHGH VQGDECLKRI AQVIQAALPS
RHCLAARYGG EEFALILPGC NAHIAEATAM RVQQQINKLS FTAQGLDASV KISVSQGIAC
ERNGQFRTPT ALLCAADTAL YRAKSDGRDR INLSQ
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