Gene Sden_0925 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0925 
Symbol 
ID4016831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1055139 
End bp1055999 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content50% 
IMG OID637954915 
Product2-dehydro-3-deoxyphosphooctonate aldolase 
Protein accessionYP_561936 
Protein GI91792285 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase 
TIGRFAM ID[TIGR01362] 3-deoxy-8-phosphooctulonate synthase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00747094 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCAAA AAATGATTAA CTTAGCCACT GAAGCTGGCG CTATCGAAAT CGCTAACGAT 
AAGCCCTTCG TGCTGTTTGG TGGCATGAAT GTGCTCGAGT CTCGAGATCT TGCCATGTCA
ATCGCCGAGC ATTATGTGGA AGTGACCCAA AAGCTGGGTA TTCCTTATGT CTTTAAGGCC
TCTTTTGATA AAGCTAACCG CTCATCGGTG AACTCCTACC GTGGTCCTGG TATGGAAGAA
GGCCTTAAAA TCTTCGAGGA AATTAAGCGC ACCTTTAATG TGCCCTTGAT AACCGATGTC
CATGAAGTGC ACCAATGTGC CCCAGTGGCA GAAGTGGTTG ATATCATTCA ATTGCCGGCA
TTTTTGGCTC GTCAAACTGA CTTAGTGGTG GCCATGGCTA AAACTGGCGC CATCATCAAT
GTGAAGAAGC CGCAGTTCCT TGCGCCCCAT GAGATGCGCC ACATAGTGAC TAAGTTTAAT
GAAGCGGGTA ACGACAAGAT TATCCTCTGT GAGCGTGGTT CAAGCTTTGG TTACAACAAC
TTAGTGGTGG ACATGCTGGG CATGGATGAC ATGAAAAAAA CCGGTTATCC AGTGATTTTC
GATGCCACCC ACGCGCTGCA ACGTCCAGGC GGGCGCGCAG ATTCAGCCGG TGGACGCCGC
GCTCAGGCAA CCGAGCTTGC AAGAAGTGGT ATGGCTTTGG GTATTGCGGG ACTCTTTATC
GAAGCGCACC CGGATCCCGA TAACGCTAAG TGCGATGGCC CTTGTGCGCT TCCGCTGCAT
CAGCTCGAAA ACTACCTCAA GCAGATGAAA GCGGTCGATG ATTTGGTTAA ATCATTCGCG
CCCATCGACA CCAGTAAATA A
 
Protein sequence
MDQKMINLAT EAGAIEIAND KPFVLFGGMN VLESRDLAMS IAEHYVEVTQ KLGIPYVFKA 
SFDKANRSSV NSYRGPGMEE GLKIFEEIKR TFNVPLITDV HEVHQCAPVA EVVDIIQLPA
FLARQTDLVV AMAKTGAIIN VKKPQFLAPH EMRHIVTKFN EAGNDKIILC ERGSSFGYNN
LVVDMLGMDD MKKTGYPVIF DATHALQRPG GRADSAGGRR AQATELARSG MALGIAGLFI
EAHPDPDNAK CDGPCALPLH QLENYLKQMK AVDDLVKSFA PIDTSK