Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0925 |
Symbol | |
ID | 4016831 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1055139 |
End bp | 1055999 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637954915 |
Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
Protein accession | YP_561936 |
Protein GI | 91792285 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.00747094 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCAAA AAATGATTAA CTTAGCCACT GAAGCTGGCG CTATCGAAAT CGCTAACGAT AAGCCCTTCG TGCTGTTTGG TGGCATGAAT GTGCTCGAGT CTCGAGATCT TGCCATGTCA ATCGCCGAGC ATTATGTGGA AGTGACCCAA AAGCTGGGTA TTCCTTATGT CTTTAAGGCC TCTTTTGATA AAGCTAACCG CTCATCGGTG AACTCCTACC GTGGTCCTGG TATGGAAGAA GGCCTTAAAA TCTTCGAGGA AATTAAGCGC ACCTTTAATG TGCCCTTGAT AACCGATGTC CATGAAGTGC ACCAATGTGC CCCAGTGGCA GAAGTGGTTG ATATCATTCA ATTGCCGGCA TTTTTGGCTC GTCAAACTGA CTTAGTGGTG GCCATGGCTA AAACTGGCGC CATCATCAAT GTGAAGAAGC CGCAGTTCCT TGCGCCCCAT GAGATGCGCC ACATAGTGAC TAAGTTTAAT GAAGCGGGTA ACGACAAGAT TATCCTCTGT GAGCGTGGTT CAAGCTTTGG TTACAACAAC TTAGTGGTGG ACATGCTGGG CATGGATGAC ATGAAAAAAA CCGGTTATCC AGTGATTTTC GATGCCACCC ACGCGCTGCA ACGTCCAGGC GGGCGCGCAG ATTCAGCCGG TGGACGCCGC GCTCAGGCAA CCGAGCTTGC AAGAAGTGGT ATGGCTTTGG GTATTGCGGG ACTCTTTATC GAAGCGCACC CGGATCCCGA TAACGCTAAG TGCGATGGCC CTTGTGCGCT TCCGCTGCAT CAGCTCGAAA ACTACCTCAA GCAGATGAAA GCGGTCGATG ATTTGGTTAA ATCATTCGCG CCCATCGACA CCAGTAAATA A
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Protein sequence | MDQKMINLAT EAGAIEIAND KPFVLFGGMN VLESRDLAMS IAEHYVEVTQ KLGIPYVFKA SFDKANRSSV NSYRGPGMEE GLKIFEEIKR TFNVPLITDV HEVHQCAPVA EVVDIIQLPA FLARQTDLVV AMAKTGAIIN VKKPQFLAPH EMRHIVTKFN EAGNDKIILC ERGSSFGYNN LVVDMLGMDD MKKTGYPVIF DATHALQRPG GRADSAGGRR AQATELARSG MALGIAGLFI EAHPDPDNAK CDGPCALPLH QLENYLKQMK AVDDLVKSFA PIDTSK
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