Gene Sden_0920 details

Gene Information

• Locus tag: Sden_0920
• Symbol: prfA
• ID: 4016826
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 1050528
• End bp: 1051613
• Gene Length: 1086 bp
• Protein Length: 361 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637954910
• Product: peptide chain release factor 1
• Protein accession: YP_561931
• Protein GI: 91792280
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0216] Protein chain release factor A
• TIGRFAM ID: [TIGR00019] peptide chain release factor 1

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.000562935
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACAAT CGGTTATTGG CAAGCTTGAA GGCTTGCTTG AGCGTAATGA AGAAGTATTG 
GCCATGTTAG GCGATGCAAC GGTTATCTCA GATCAAGAGC GCTTTCGCGC CTTATCGAAA 
GAATATTCTC AACTTGAAGA TGTAGTCAAA AGCTTCAAGG CCTTCCAGCA AGCCCAGCTA 
GACTTAGCCT CGGCGAAAGA AATGCTGCAA GAAGACGACG CCGAAATGCG TGAGATGGCC 
CAAGAAGAAA TGAAAGCGGC CAAGAAAGTG ATTGAGCAAC TCGAAGATGA GCTGCAAATT 
CTATTGCTAC CCAAAGATCC TAATGATGAC ACCAACGCCT TCTTAGAAAT TCGCGCCGGT 
GCCGGTGGTG ATGAAGCGGC GATTTTTGCT GGGGATTTAT TCCGCATGTA CAGCCGCTTC 
TGCGAAGCCA ATAAATGGCA AGTGGAAGTG ATGAACGTCA ATGAAGCCGA CTTAGGTGGC 
TTTAAAGAAA TTATCGTTAA AGTTAGCGGT GAAGGCGTTT ATGGCAAGTT AAAGTACGAG 
TCTGGCGGTC ACAGGGTACA ACGTGTGCCT GAGACTGAAT CTCAAGGCCG AGTTCATACT 
TCTGCCTGTA CTGTGGTGGT GCTTCATGAA GTCCCTGAAG CCGAAGCGAT TTCTATTAAT 
CCCGCCGACT TAAAAGTAGA CACCTTCCGC GCCTCGGGCG CAGGTGGTCA GCACGTGAAC 
AAGACAGATT CTGCCATTCG TATTACCCAT ATTCCATCGG GGATCATAGT CGAATGTCAG 
GATCAACGCT CACAGCACAA GAACCGTGCT CAAGCCATGA GCGTGTTAGC GGCCCGAATT 
CAAGCGATTG AAGATGAGAA GCGTCGCAGC GCAGAAGAGA CGACGCGTCG TAGTCTTGTG 
GCCAGTGGCG ATCGCTCTGA GCGCATTCGC ACCTATAATT ACCCTCAAGG ACGAGTGAGC 
GATCACCGTA TCAACTTGAC CCTTTATCGC TTAAACGAAA TCATGGAAGG GGATTTAAAT 
GCCTTGCTCG AACCTATTAT GCTAGAGCAT CAAGCGGATC TTCTTGCCGC CCTTGCCGAT 
GAATAA 

 

Protein sequence

MKQSVIGKLE GLLERNEEVL AMLGDATVIS DQERFRALSK EYSQLEDVVK SFKAFQQAQL 
DLASAKEMLQ EDDAEMREMA QEEMKAAKKV IEQLEDELQI LLLPKDPNDD TNAFLEIRAG 
AGGDEAAIFA GDLFRMYSRF CEANKWQVEV MNVNEADLGG FKEIIVKVSG EGVYGKLKYE 
SGGHRVQRVP ETESQGRVHT SACTVVVLHE VPEAEAISIN PADLKVDTFR ASGAGGQHVN 
KTDSAIRITH IPSGIIVECQ DQRSQHKNRA QAMSVLAARI QAIEDEKRRS AEETTRRSLV 
ASGDRSERIR TYNYPQGRVS DHRINLTLYR LNEIMEGDLN ALLEPIMLEH QADLLAALAD 
E