| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0907 |
|---|
| Symbol | |
|---|
| ID | 4016716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1032929 |
|---|
| End bp | 1034401 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637954897 |
|---|
| Product | carbon starvation protein CstA |
|---|
| Protein accession | YP_561918 |
|---|
| Protein GI | 91792267 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1966] Carbon starvation protein, predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.695183 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGATTT TTTTGATTTG TATTGGCCTG CTATTACTCG CCTATAAGTT TTACAGCCCC
TTTGTCGAGC GTCAAGCGGG CATAGACCCC AAGGCTCAAA CGCCTCAGGC ACGGTTTGAT
GATGGGGTGG ATTATGTCAA AGTGCATCCC CTTAAAGCTT ACCTTATTCA ATTTCTTAAT
GTGGCTGGGG TCGGGCCTAT TTTCGGCCCG ATTTTAGGCG CACTTTATGG GCCTATCGCC
TTAGTCTGGA TTGTGCTGGG TAATATCATC GGCGGCGCAG TGCATGATTA TTTCTCGGGT
GTGTTGAGCA TTAAGGAAGA TGGCAAGAGC CTGCCTGAAA TCGCCGGTCA TTACTTTAAT
GGCTACTTTA AAGCCGTCAT GCTGCTGTTC ACCGCCATGC TGCTGTTCTT CGTCGGGGTG
GTGTTTATCA TGAGCCCGGC GGGATTACTC AGTAATCTAG CACTGTTTGA AGGCACAATA
CTGGCCAATA ACACCTTTTG GGTGTTGGTT ATTTTAGCCT ATTACTTTTT GGCGACCTTA
CTGCCGATTG ATAAAATTAT CACTAAGTTG TATCCCGCTT TTGGCCTCTT GATGATAGTC
ATGACAGTCT CTATTGGGCT GGCAATTCTT TTTAATGCAC CAGAGTTACC TGTGATGGGA
GATGTGCTGG CTTACTTTGA TCATAGCCAT TATAACAATG AGTTGTTGGC GCCTAATCCC
GATGGCTTGC CTGTGTGGCC CTTGTTGTTT GTGACTATCA CTTGCGGCGC TATCAGTGGG
TTTCATTCCA CTCAAGCGCC GATAATGGCG CGCTGTTTAA CCAATGAGCG TTATGTGCGG
CCTGTATATT ACGGCGCTAT GATTTCTGAA GGTGTGGTGG CCTGTGTTTG GGCGACCGCG
GGCATGGCGG CATTTCCCGG TGGTTATCTT GAGCTCAAAA CTTTGCTTGA TCAAGGCGGC
CCAGGTTTAG TGGTTAACCA AGTGGCCAGC AGTTATTTAG GGGTTGCTGG CGGCGTGATG
GCCATTATTG CCGTGGCCGT GTTCCCTATT ACGTCGGGCG ATACCGCCTT TAGATCGCTG
CGCCTCACCC TGATAGATGC CTTTAATATT CCCCAGAGTG TGCGTAATCG TTTGCTGGTG
GCGATTCCCA TTTTGGTTAT CGCTTACTTA ATGACAAAAA TCGATTTCTC CTTGATTTGG
CGCTATTTTG CCTTTTCTAA CATGCTGTTA TCCACTAGCG TCCTGTGGCT TGCCACTAAA
TATTTATTTG ATCGAGGTGC CTTCCATTGG ATAGTGAGCT TGCCGGCTAT TATGGGCACC
AGCGTGACTG TCTCTTACAT AGTCACCGCC GGCATAGGCC TAGGTTTACC GCAATCATTG
AGCCAGCCTG TGGGGATAGC TGTGGCTGTG ATTGGTTTGA TGGCCTTAAC ACTCACTCAT
GTTAAGCATA AGCGTCAACG GCAAGTGCTT TAG
|
|---|
| Protein sequence | MLIFLICIGL LLLAYKFYSP FVERQAGIDP KAQTPQARFD DGVDYVKVHP LKAYLIQFLN
VAGVGPIFGP ILGALYGPIA LVWIVLGNII GGAVHDYFSG VLSIKEDGKS LPEIAGHYFN
GYFKAVMLLF TAMLLFFVGV VFIMSPAGLL SNLALFEGTI LANNTFWVLV ILAYYFLATL
LPIDKIITKL YPAFGLLMIV MTVSIGLAIL FNAPELPVMG DVLAYFDHSH YNNELLAPNP
DGLPVWPLLF VTITCGAISG FHSTQAPIMA RCLTNERYVR PVYYGAMISE GVVACVWATA
GMAAFPGGYL ELKTLLDQGG PGLVVNQVAS SYLGVAGGVM AIIAVAVFPI TSGDTAFRSL
RLTLIDAFNI PQSVRNRLLV AIPILVIAYL MTKIDFSLIW RYFAFSNMLL STSVLWLATK
YLFDRGAFHW IVSLPAIMGT SVTVSYIVTA GIGLGLPQSL SQPVGIAVAV IGLMALTLTH
VKHKRQRQVL
|
|---|
| |