| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0888 |
|---|
| Symbol | |
|---|
| ID | 4016989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1014265 |
|---|
| End bp | 1015524 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637954878 |
|---|
| Product | peptidase M24 |
|---|
| Protein accession | YP_561899 |
|---|
| Protein GI | 91792248 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0006] Xaa-Pro aminopeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAATCG GTGTCGGTGG TGTGAGCCAG CAAGCAGCCT TAGCTAAATT AGCTGATATG
ACTCAAGATA TAGCGCCAGT CACGGAAGCA GAGTTTTTAC AGCGTATCGA GCGGGCGCAG
CAATTAATGC AGCAGCAGGG CTTGGGGGCC ATTTATGTCA ACGCTGGCAC TAATCTGTAT
TATTTTACCG GCACCCGTTG GTTTTCAAGT GAGCGTCTTG TAGGGGCCAT CATCCCGGCA
AAAGGCGAGG TTAAGTATAT AGCACCCGCT TTTGAGCTTG ATACCTTGCA AGGTTACATG
ACCATCAAAG GCCCTGTGCA TACTTGGCAT GAAGATCAAA GTCCCTATGA GCTGGTGGAG
CGGGTTATTA CCCAATTGCG GCTAGATAAT CTGCTGGAGA CGCGAGGCGC GGCAATAAAC
GACAACGAGC CACTCAAGGT CGGCTTGGAT GAATCAACGC CCTTTTTTAT CACAGATGGC
ATAGCTCAAG CAGCCGCTGA GGTTAAATTT GTTAGTGCTA AAGCCGTCAC TGCAGGCAGT
CGAATGCTAA AATCAGCCAC CGAAATTGCG CTAATCCAAC GGGCCATGGA CATGACCCTT
GAGGTGCATA AGGCAGTGGC AAGTATCTTA GTCGAGGGGA TAACTACTGC TGAGGTAGAA
GATTTTATCG ACCGTGCCCA TTACGCGGTC GGCGCACCCA GAGGCTCGTA TTTTTGCATT
GTACTCTTTG GTGAAGATAC GGCTTACCCC CATGGAGTTA AGTCGCCCAA ATCACTTGAA
CGCAATGACA CTGTGCTGAT AGACACTGGC TGTCAATTAC AAGGTTATAA CTCAGATATT
ACTCGCACTT ATGTGTTTGG TGAAGCCAGT CCGCGTCAGC GCGAGTTATG GCAATTGGAG
CAAGCGGCCC AGCTGGCCGC CTTCAATACG GCAAATCTAG GGGTGTCTTG TGCGGCGGTG
GATTTAGCTG CGCGCAGGGT ATTAGAAACC GCAGGTTTTG GTCCAGGATA TGCGGTGCCA
GGGCTGCCCC ACCGGACGGG TCATGGCATA GGCTTAGACA TCCATGAATG GCCGTACTTA
GTGCTCAATG ACTTGACGCC ACTTGATGTT GGCATGTGTT TTAGCAACGA GCCCATGCTG
TGCGTACCTG GAGAATTTGG CATTCGTCAC GAAGATCACT TCTACATGAC GGACACTGGC
CCTAAGTGGT TCACTGAGCC AGCTCACTCA ATCGATGACC CTTTCGCCTT AGCCTGCTAA
|
|---|
| Protein sequence | MTIGVGGVSQ QAALAKLADM TQDIAPVTEA EFLQRIERAQ QLMQQQGLGA IYVNAGTNLY
YFTGTRWFSS ERLVGAIIPA KGEVKYIAPA FELDTLQGYM TIKGPVHTWH EDQSPYELVE
RVITQLRLDN LLETRGAAIN DNEPLKVGLD ESTPFFITDG IAQAAAEVKF VSAKAVTAGS
RMLKSATEIA LIQRAMDMTL EVHKAVASIL VEGITTAEVE DFIDRAHYAV GAPRGSYFCI
VLFGEDTAYP HGVKSPKSLE RNDTVLIDTG CQLQGYNSDI TRTYVFGEAS PRQRELWQLE
QAAQLAAFNT ANLGVSCAAV DLAARRVLET AGFGPGYAVP GLPHRTGHGI GLDIHEWPYL
VLNDLTPLDV GMCFSNEPML CVPGEFGIRH EDHFYMTDTG PKWFTEPAHS IDDPFALAC
|
|---|
| |