Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0844 |
Symbol | |
ID | 4016808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 967262 |
End bp | 968443 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637954834 |
Product | major facilitator transporter |
Protein accession | YP_561855 |
Protein GI | 91792204 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTCTTG AATTTAATCG CTTGGGATTT TCTATGAAGA ATGAGTCTAT CATTTTTATT GCCTGTATCA CGGTATTCTT GGCACAGCTG GGAATGACTA TGTATCTACC GGCTCTGCCT ATTATTGCAG AAGCATTCTC TAGCCCAGCA CAAGATGTCT CTCTTTCCTT ACCCGCTTTT TTGATAGGAA TGGCGGCACC TATGCTGGTC TGGGGAAGCT TAAGTGAAAA ATATGGTCGG AAAACGATGC TTTCGGTATC TCTTTTATCA TATGCAATCT GTAGCGCTGG CATATCTTTA GTATATGACA CAGAAATGTT TATTTTACTT CGTTTCCTAC AAGGCTTGGG GGCTAGTGGT ATGTCAGTTA TGTCACGGAT TATGATCCGT GACCGATTCA GCGGTGCACT ACTGTCTAAG AGTCTGTCTT GGCTGTCTAT TGCATTTGTT GTTTCACTTG GCGTGGGCCA ATATTTGGGA GCAGTACTTT TGGTGAGCTT GGGCTGGCAA GCTATTTTTC TCAGCCTTGC AATTGCTACA TTATTGTTAT TTTTAGTCCT TATAAGGCTA CCATCTCCAA ATGTACAGCC TTCCAGTAAC TCATTATCAT TTCTTGCCAC TTACGCTAAG CTATTGCACA GCAGAGACTT TTTTTTACCT GCACTTGCAG GTGGCCTAGG TTACGGGGTG ATCATCGTCT TCAATACCAA TGCGCCATTT ATATTTCAGG GGGCCTTCGG TTGGAGTGCA TCAGAGTACG GGCTGTTGGG GTGGCCAATA AGCCTTGCCT ACTTAGTTGG TGCATGGCTG GTTAATCGGT ATGTGATAAG AAAAGGCAAC ACTTTTTTTG TCTTAATGGG GTTAAGCATC TTGCTCTTCA GTTGTACGGT TATGTTATTT GGCAGTATCT TGCTATTGCC TTTGTTGCTA TGGGTTCCTT ATTGTCTGGG AGTCGCTGGA CAAGCGATGA ACTATCCCGT CAGTATGGCT ATTGCTACTG AAAATGCGCC CATAAAGGGC CCTTATGCTA TGGCTTTGTG TGGATTCATG CATCAACTTA TGGCCGCCGT TATCGGTGTT GTAGCGAGTA TATTACCCGG GGAATACATT TGGATGAGCA CGGGGTTGAT GTGCGCGCTG GCAATGGCCG CACTTGTGGT TATTATGCGA ACCCGTCCAT AA
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Protein sequence | MRLEFNRLGF SMKNESIIFI ACITVFLAQL GMTMYLPALP IIAEAFSSPA QDVSLSLPAF LIGMAAPMLV WGSLSEKYGR KTMLSVSLLS YAICSAGISL VYDTEMFILL RFLQGLGASG MSVMSRIMIR DRFSGALLSK SLSWLSIAFV VSLGVGQYLG AVLLVSLGWQ AIFLSLAIAT LLLFLVLIRL PSPNVQPSSN SLSFLATYAK LLHSRDFFLP ALAGGLGYGV IIVFNTNAPF IFQGAFGWSA SEYGLLGWPI SLAYLVGAWL VNRYVIRKGN TFFVLMGLSI LLFSCTVMLF GSILLLPLLL WVPYCLGVAG QAMNYPVSMA IATENAPIKG PYAMALCGFM HQLMAAVIGV VASILPGEYI WMSTGLMCAL AMAALVVIMR TRP
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