| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0809 |
|---|
| Symbol | |
|---|
| ID | 4017032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 927366 |
|---|
| End bp | 929123 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637954793 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_561821 |
|---|
| Protein GI | 91792170 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTTAAAA AACTGTGGTT CTTGTTAACG GCTTGGTGCC TTTGCTTCCA AGCCGTTGCT
AATTACTCGG ATGAAGAATG CTGTCAAGCT CAGCTAAAAG CTGCTGATGA AATTCGCTCT
AGTGATTCGC TTGATTTCGG CCAAAAACTT AAAGCAATAA GTGAACAAAG CACATCACTT
AATGATAATG AAGCAGATTA TTTTAAATAT CTCCAAGCTT ATGAATTTAT TTTTAAAGGT
GATTTTCAAG AGGCTCTTAA GATTTTTGAA GAGCTATCGC ATGCTGCAGT TAATTCAGAC
ATAAAATTTC GTTCTATGTT GTCGCTCATT AATGCTTATG CAATACAACG ACGCTGGAAT
GAAGGTTTAT TGGTATTGAA TAATGTTTTG AGCTTACTCC CTTCTATTGG CAATCAAGAC
ATCAAAGGGC AAAGCTTGAT GGTTGCTAGC ATTTTCTACA ACCAATTGGG TCAGCATGAA
TTAGGTCTTG AGTACAGTGA TCGTTTAAAG CAAGGGCATA TCGATCCCAG GAGTATATGT
TTTGCTGAAC AGCTTAAGTT TGAAGCTGTG TTGCAATTGA AGCGTTCGCC AGAGGAATTA
GACGAAACTT ATAATAAAGG CATGCGGCAA TGTGAAATTG CGGGAGAAAA AGTACTTCAG
GCAATTATTA TTAAGTTGTA CGCCGAATAT TTGCTAGAAA CGTTGTTGAA ACCTCAAGAT
GCGAAAGCAT TGTTGGATGA ACATGAAGCG TTGGTGCTCT CGGCAAAATA CGCCCCGATC
ATAGCGATTT ATCAGAGTCT TATCGCCAAA GCCAATTGGC AAGTGGGCGA CAAGGAAGCG
GCCTTTGACA TTGCCAGCTC GCTGTCTATT AACCCAGCCT CTATGGCCAC CCTTGAAGCG
CAAATTCGCG CCCAGCAAGT CCTGTATGAT TATTACTTAG ATAAAGGCGA TACTGCTAAG
GCGCTAGAGG CCTATATCAA ATACGCCGAG GCCGAAAAGG CCAATCTGGA TGAAGTCAAA
ACTAAGACCC TAGCCTTTCA AATGGCTCAG CATCAGAGCC TAGAGCAGCA GAATCGCATC
GCCTTGCTCG ATGAACAGAA TAAATTTCTC ACAGTGCAGC AGCAACTGGA CAAGGCCGAA
GCCTTCAATA ACCGTTTATT CATTGTCGTG CTCCTGTGCA TCGCCTTGGG CCTTGGGACT
TGGGGTTGGC ATTCATGGAA GAACCAGCAA CGTTTGCGTC AATTGGCCGA GTATGATGGC
CTCACTGGGC TGTTTAGCCG CGGTCACTTT ACCCAAGTGG CCTTGAGCGC TGTGGATTAT
GCCAAAGCGC TCAAGGCGCC GATCAGCTGC ATCTTATTGG ATATAGACAA GTTTAAATGC
ATTAACGACA CCTTTGGCCA TGCCACGGGA GATTGGGCGT TAAGGGCCGT GGCGCAAATG
TGCCGGGAAC TGTGCCGTGA GCATGAAATT ATTGGCCGCA TAGGGGGGGA AGAAATTTGC
TTCCTGCTGC CTGAATGCCA TCAAGACAAC GCCAGCCAGT TAGCCCAAAG CTTGCGTCAA
GGCTTAACTC AGTTGGACAC CAGTGCCAGC GGGCATAAGT TTGACTTAAG TGGCAGTTTT
GGGGTCAGTT GTTCGACCAT CTCAGGTTAT AAATTGGATA AATTGATGCA ACACGCCGAC
AACGCCATGT ACCAGTCCAA GCATGCTGGC CGTAATCGTG TGCAGGTTTA CCATAGTGAG
CTAAAAGTCA GTGTTTAA
|
|---|
| Protein sequence | MLKKLWFLLT AWCLCFQAVA NYSDEECCQA QLKAADEIRS SDSLDFGQKL KAISEQSTSL
NDNEADYFKY LQAYEFIFKG DFQEALKIFE ELSHAAVNSD IKFRSMLSLI NAYAIQRRWN
EGLLVLNNVL SLLPSIGNQD IKGQSLMVAS IFYNQLGQHE LGLEYSDRLK QGHIDPRSIC
FAEQLKFEAV LQLKRSPEEL DETYNKGMRQ CEIAGEKVLQ AIIIKLYAEY LLETLLKPQD
AKALLDEHEA LVLSAKYAPI IAIYQSLIAK ANWQVGDKEA AFDIASSLSI NPASMATLEA
QIRAQQVLYD YYLDKGDTAK ALEAYIKYAE AEKANLDEVK TKTLAFQMAQ HQSLEQQNRI
ALLDEQNKFL TVQQQLDKAE AFNNRLFIVV LLCIALGLGT WGWHSWKNQQ RLRQLAEYDG
LTGLFSRGHF TQVALSAVDY AKALKAPISC ILLDIDKFKC INDTFGHATG DWALRAVAQM
CRELCREHEI IGRIGGEEIC FLLPECHQDN ASQLAQSLRQ GLTQLDTSAS GHKFDLSGSF
GVSCSTISGY KLDKLMQHAD NAMYQSKHAG RNRVQVYHSE LKVSV
|
|---|
| |