| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0766 |
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| Symbol | |
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| ID | 4016605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 886348 |
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| End bp | 888282 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637954751 |
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| Product | ammonium transporter |
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| Protein accession | YP_561779 |
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| Protein GI | 91792128 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0004] Ammonia permease
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR00836] ammonium transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.543841 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAAA GTTTCTTGCT CAACCTTTGG ATCTTGCTCT GCGCTTGCTT GGTATTGATT
ATGCAGGCAG GCTTTACCTG TTTCGAAAGC GGCAATGTAC GCAACAAAAA CAGTGTGAAT
GTTGCCCTTA AAAATGTCTC TGATTTTTGT GTCTGCGCAG TCTGCTATTG GGCCTTTGGC
TATGCGCTCA TGTACGGTAA TTCTATCGAC GGGATAGTAG GAGCTAATGG TTTCTTCTAC
TCCACTACAA CCAACTCTCA TGAAACCAGC TTTTTTCTAT TTCAATTAAT GTTTTGCTGT
ACATCAGCCA CCATCATCTC AGGGGCCGTG GCCGAACGCA TGCGCTTTAC CGGTTATATC
TTAGTCACCT TGTTAGCCGC TTCGCTTATC TACCCCCTCT TTGGCCACTG GGCCTGGGGA
GGGCGAATTC TTGGCAGTGA AACTAGTACG CCGGGATGGT TAGAGCAATT AGGTTTCATC
GATTTTGCTG GCGCCACTGT GGTGCATTCG GTCGGTGGTT GGATGGCGTT AGCGTGCGTC
CTCATTATTG GTCCCCGCCT TGGACGATTT AATAACAAAC ACGGAGTTAA TCAGATTTTT
GGGGATAATT TACCCCTGAC AGCCTTAGGC ACTTTCTTGT TATTTCTCGG TTGGTTCGGT
TTTAACGGTG GCAGTTACGG CAAAATTGAT GACATGCTTT CCAGTGTATT TGTCAATACT
GCCCTCGGGG GCACCTTCGG TGGTTTTGTG GTGCTGCTAA TCTGTATTTG GCAACAGTCC
TTATTGAGCA TACGCTTTGT ACTTAATGGC GTCTTGGCGG GTTTAGTTGC CATCACAGCC
AGCGCCAACA GCATCAGCTC CATTGATGCC GCGACCATAG GGGGGATCTC GGGCGCCCTC
AGTTTTTTCG CAACCATATT GCTAGAAAAA TGCAAAATCG ATGATGTCGT CAGTGTAGTG
CCAGTGCATC TCATCGGGGG TATTTGGGGC ACATTAGCCC TAGCTATCTT TGCCGATGGC
CAATACTTTA TTGCTGGTAA CAGTCGTGTC GATCAATTTT TAATTCAGCT ATTGGGCGTG
GTGACCTGCG GGATATTTGC CTTTGGGTTA CCTTATATGT TAATTCGATT ATTAAACCGC
GTTTATCCTT TAAGAGTCTC ACCGCGAGTG GAAATACTCG GGCTAAATTT TGGCGAATTT
GGCTTAAAAA GTGAAACCTT TAACTTTCTC AAACAAATGC GGAAAAATAA AAACAGTCAC
AAAAATAAGC AAGCTGTTTC GGTAGACTTT TTTTCCGATA TAGGCCTGAT TGAAGCCGAG
TACAATGCCT TTTTAGAGGT CATCAATTTG CAACAAAGGC AGGCTGACAT CAATAGCCAT
AGATTGTCTC GACTGGCGAA AACGGATCAT TTGACACGTT TAAATAACCG CTTAGGATTC
GATGAATGTT ACGACAGTGA ATGGCTCAGA ATGCGGCGGG AGAAAAAGCC CTTTAGCTTG
TTACTCATAG ATATAGATCA TTTCAAATTG TATAACGATC ATTATGGCCA CCCTAGAGGC
GATCAATGCC TGCAACAAGT CGCATTAGTT CTAGCCTCAA CCGCAAAGCG GCCAGCAGAT
TGCTGCGCTA GGGTCGGCGG CGAAGAATTT GCCATATTGC TGCCCGATAC TGACAGCGAG
GCAGGAGAAA AAATCGCCAA TGACATTAAT ATTCGCCTTA AAGCACTGGA AATTCCTCAT
CTCAGTTCGC CCATCATGCC TTATGTCACC GTCAGTATCG GTATCGCCAC TTTAACGCCA
GAACGCTACG ATAGTCTTGA TCAGGCTTAT CTCTACCAGT GCGCCGATGA TGCTTTGTAC
AGCGCCAAGC AAGCGGGGCG AAATGGCGTT AAAGCAGTCA TCATAGATGA AGCCCATGAG
CAGACTAAAA AGTAA
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| Protein sequence | MSESFLLNLW ILLCACLVLI MQAGFTCFES GNVRNKNSVN VALKNVSDFC VCAVCYWAFG
YALMYGNSID GIVGANGFFY STTTNSHETS FFLFQLMFCC TSATIISGAV AERMRFTGYI
LVTLLAASLI YPLFGHWAWG GRILGSETST PGWLEQLGFI DFAGATVVHS VGGWMALACV
LIIGPRLGRF NNKHGVNQIF GDNLPLTALG TFLLFLGWFG FNGGSYGKID DMLSSVFVNT
ALGGTFGGFV VLLICIWQQS LLSIRFVLNG VLAGLVAITA SANSISSIDA ATIGGISGAL
SFFATILLEK CKIDDVVSVV PVHLIGGIWG TLALAIFADG QYFIAGNSRV DQFLIQLLGV
VTCGIFAFGL PYMLIRLLNR VYPLRVSPRV EILGLNFGEF GLKSETFNFL KQMRKNKNSH
KNKQAVSVDF FSDIGLIEAE YNAFLEVINL QQRQADINSH RLSRLAKTDH LTRLNNRLGF
DECYDSEWLR MRREKKPFSL LLIDIDHFKL YNDHYGHPRG DQCLQQVALV LASTAKRPAD
CCARVGGEEF AILLPDTDSE AGEKIANDIN IRLKALEIPH LSSPIMPYVT VSIGIATLTP
ERYDSLDQAY LYQCADDALY SAKQAGRNGV KAVIIDEAHE QTKK
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