| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0738 |
|---|
| Symbol | |
|---|
| ID | 4016844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 856063 |
|---|
| End bp | 858606 |
|---|
| Gene Length | 2544 bp |
|---|
| Protein Length | 847 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637954723 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_561751 |
|---|
| Protein GI | 91792100 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0108325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TATTCTTATG GCCAAGTGCT TGCGCCCTCG CGGTGTCAGT CTCTATCACT
CCAAATGTAA TTGCTGCTGA GAAAAGTGTT GAGCGTATAG AGGTGACAGG ATCACGTATT
AAGCGTACCG ATATTGAAGG GCCATCGCCT GTCCAATCTA TCAATAAAGA CGATATCGCT
AACATGGGTT TTGACAACCT ACAACAATTA CTCGAGCGCA TGCCTGCAAA CGGTTCCGGT
GCATTCTCAA CTCGTGGAAA CAGCCAAGAT TCTACCGCTA ATGGTGGAGC ATCAATCAGT
TTACGTGGCT TAGGACCTGA TGCCACCTTG GTTCTTATCA ATGGTCGCCG TGTTGGCGCG
AGTGCTTTTG CTGAAGGAAT TTCGAATTCG TTTGTCGATA TCAATAATAT CCCTGTTTCG
GCCATTGAAC GGATTGATAT TCTCAAAGAT GGTGCATCAG CTATTTATGG TTCCGATGCG
ATTGCCGGTG TAGTCAACAT TATCTTAAGA AAAGACATTG AAGGTATTGA GCTTAGCCTT
GGTTATGGTG ATGATAATGG TACTGGTTAT GATGAGACAA AAGGGAGTTT AGTATGGGGC
GTAAAAGCCG ATAAAGGCAG CGCGTCAATT ATCCTTGATT ACTTTACCAA TGGCACTTTG
TCTGCAGAAG ACATGGGCCG CTTTGGTACC GCTAACCAAT CACCTTACGG CGGTGACGAT
TCTCGTTCAT CACGTGGCTT CCCTGGCTAT TTTTATGTTA ATGGCGTACA AACTATTGAC
CCTGATTGCC CAGCAGATAG CATCGATGGT GAATATTGTT TATTTGACTA TGGTCCATAC
AACATGACCA TTCCTACCTC TGAACGTGTG GGCGCTATTG GCCAATTTGA TTACATGTTA
GGTGATGATT TAACTGCATT TTTAGAGTTG TCTGTACAAC ACAACACTTC TGAGGCCGGT
GGTGCACCAA CGCCACTGGA TGAAAAAGCA AAAATGACAG TACCAGGCAC CCATCCTAAT
AATCCATGGG GCCAGGATAT TAAAATAGGC CGTTTTAGAA CCGTTGACGC TGGTGCTCGT
CGTTGGGATA TCGAGTCGGA TACCATGCGT GTGGTTGCCG GACTTCGCGG TGTAGTTAAT
GATTGGGATT GGGAAGTGTC AGCGCAACGT GGGCGCAGTG AATCGACTCA GACAGGGGAT
CGCAGCCAAG GTTGGGTGAG AACAGATTTC CTACAAGCCG AAATTGATGC GGGCAACTAC
AATCCATTTG GCGGCACTAT CAATTCGCAA GATGTGATTG ACCGTATTAC CACCAATTTA
GTAAGACAAG GTAAGTCAAG CATCACAGCT TATGATGCCA GCATTTCTGG GCATGCATTT
ACCATTGCTG ATCGCGATAT TATGATGGCT GCCGGTGCCG AGTATCGCGA AGAAAGCGTC
AGTGACGTGC CTGATGATCA GTTTCAACGT GGTTTGATTT TTGGTACTGA AGCTGTATCT
GCGTTTGGTT CACGAGACCA ACATGCTGCC TATGTAGAAT TCTCTATTCC TGTTGCGGAT
AACTTTGAGC TGCAGTTAGC GGGTCGTTAC GATAGCTACA GTGATTTTGG TTCAACTACT
AACCCTAAAA TTGCCTTCCA GTGGGGTATT AGTGACGAGG TAACCGCTCG TGGTTCTTGG
TCTACCGGTT TCCGTGCACC ATCGTTAGCG CAAATTGGTC TTGGTCCATC TGAGAAAAGT
GACTTTTTAG TGGATAGATA TCGCTGTGCT GCCGATAATC TAGACTGTGG AAAACTTGAC
TATAATTTCC TGTTTGCCGG TAACCCTGAC CTTGAAGCTG AAGAGTCTGA AACGTGGAAC
TTGGGTATGA TTTGGGCACC CAGTCAGCAG TTTGATATTG GTTTTGATAT ATTCAATATC
TTACAAGACA ACAAGATTGA CGCGCTGCAA AACAAAGATC TTTATGCCGC AAATTGTAAT
GATCAAAACA GTACCGTTTG CCGGCGAACA GCGCCCCAAG CTGGGCAAAC ATTTGGTTCG
ATTGACGTGA TCCAATCAGC CTTTATCAAC ATTGGTTCGC AAGAAGTACA AGGCGTGGAT
TTATCGACTC ATTATGGTCT TGAACTAGAC AACTACGGCG ATATTAAGTT TGGTGTAGAG
TACAGCTACT TAATCAGTTT TGAGAAAGAA ATTGATGGTA AAACTATCGA TTATACAGGC
GAGTATGAGT ATCCACAGCA CAGATGGTTG GCGACAACCA ACTGGAACAT GGACGACTTT
GCGGCTAACG TAAATTTCAG CTACATAGGT GAGTTTGAAG ACTTCAATAA AACGCGTACT
GTTGATGCAC AGTTGTTAGT GGACATGTCG GGTTCTTATC GTTTCAACGA TACGGTTAAA
TTAACCCTTG GTGTTAATAA TCTGTTTGAT GAAGAGCCAT CATTTGCTAT TGGCGATGGT
GATGCTGATT TATACGGTTA TGCTATGGGC GTGCATAACC CATTAGGCCG TTATATTTAT
ACTAAAGTCA CAATGAACTT CTAA
|
|---|
| Protein sequence | MKKIFLWPSA CALAVSVSIT PNVIAAEKSV ERIEVTGSRI KRTDIEGPSP VQSINKDDIA
NMGFDNLQQL LERMPANGSG AFSTRGNSQD STANGGASIS LRGLGPDATL VLINGRRVGA
SAFAEGISNS FVDINNIPVS AIERIDILKD GASAIYGSDA IAGVVNIILR KDIEGIELSL
GYGDDNGTGY DETKGSLVWG VKADKGSASI ILDYFTNGTL SAEDMGRFGT ANQSPYGGDD
SRSSRGFPGY FYVNGVQTID PDCPADSIDG EYCLFDYGPY NMTIPTSERV GAIGQFDYML
GDDLTAFLEL SVQHNTSEAG GAPTPLDEKA KMTVPGTHPN NPWGQDIKIG RFRTVDAGAR
RWDIESDTMR VVAGLRGVVN DWDWEVSAQR GRSESTQTGD RSQGWVRTDF LQAEIDAGNY
NPFGGTINSQ DVIDRITTNL VRQGKSSITA YDASISGHAF TIADRDIMMA AGAEYREESV
SDVPDDQFQR GLIFGTEAVS AFGSRDQHAA YVEFSIPVAD NFELQLAGRY DSYSDFGSTT
NPKIAFQWGI SDEVTARGSW STGFRAPSLA QIGLGPSEKS DFLVDRYRCA ADNLDCGKLD
YNFLFAGNPD LEAEESETWN LGMIWAPSQQ FDIGFDIFNI LQDNKIDALQ NKDLYAANCN
DQNSTVCRRT APQAGQTFGS IDVIQSAFIN IGSQEVQGVD LSTHYGLELD NYGDIKFGVE
YSYLISFEKE IDGKTIDYTG EYEYPQHRWL ATTNWNMDDF AANVNFSYIG EFEDFNKTRT
VDAQLLVDMS GSYRFNDTVK LTLGVNNLFD EEPSFAIGDG DADLYGYAMG VHNPLGRYIY
TKVTMNF
|
|---|
| |