| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0732 |
|---|
| Symbol | |
|---|
| ID | 4016838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 847044 |
|---|
| End bp | 849362 |
|---|
| Gene Length | 2319 bp |
|---|
| Protein Length | 772 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637954717 |
|---|
| Product | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase |
|---|
| Protein accession | YP_561745 |
|---|
| Protein GI | 91792094 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0620] Methionine synthase II (cobalamin-independent) |
|---|
| TIGRFAM ID | [TIGR01371] 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTG CAAATTTAGG ATTTCCAAGA ATAGGCCGTC AGCGCGAATT GAAGTTCGCT
TTAGAGAAAT ATTGGCGCGG TGAGCTAACT CAGGCAGAAT TGGTTCAAGT GGCTGATGAG
CTTAAGCGTA CACATTGGCA GTGGCAGGCC GATGCCGGGG TTGAGCTGAT CCCTGTGGGG
GATTTTGCCT ATTACGATCA GGTGCTCACC TTAAGCGCGA CCTTAAATGC GCTGCCTGCA
CGCCATAGGG AAAAAGACAG CCAAGGCAAT TTATTGCCTA TTTGCCTAGA TACTTTATTC
CGGGTTGCCC GTGGCCGTGC ACCGAGCGGC CATCAGGCTT GCGCCGCCGA AATGACCAAA
TATTTCAATA CTAACTACCA CTACCAAGTG CCAGAGCTTT ATGAAGGCCA GCAATTCTCT
ATTGGCTTTG AGCAAATTTT TGATGAGGTG ACGCAGGCGC AGCAACTGGG GCATCAAGTG
AAGCCAGTGC TGCTTGGGCC TGTAAGTTAT CTGCATTTAT CCAAGACCCT TTCAAGTTTT
GATAAGTTGA GCCTTTTACC CAGCCTAGTG AAAACCTATG CTGAAATTTT GCAGCGTTTT
GCTGCTCAAG GCGTCACTTG GGTGCAGCTG GATGAGCCGG TATTGGGGCT TGATTTATCC
CCCCAATGGC AACAAGCGGT CCAGTGGAGT TATGCAGAAC TGAATAAAGA GCTTAATTCC
GAACAAAATG GTAGTAAAGG CAATAAAATT AATCTGTTGC TTGCAAGTTA CTACGCTTCT
ATTGCCCACA ATCAAGCTTG GGTGAGTGAA TTGCCGGTAG CGGGATTGCA CATAGACTTA
GTCACAGCGC CAGAGCAATT ATCCCTATTC GCCAGCAAGC TTAAGCAGGA CCAAGTATTG
TCTCTTGGGG TAATCAATGG CAGAAATGTG TGGGCGGCAG ATTTACCCGC CATCAGCACA
TCCCTTGCAA AGCTTGTGAC TGAGCTCGAA GACAGGGCTT GGCTAGCGCC TTCGTGTTCT
TTACTCCATA CGCCTGTGAC CTTAGAGACT GAAACTAAGC TAGCCCCAGA ACTTAAAGCC
CAGCTGGCAT TTGCTAAGGA AAAGCTGCAA GAACTTAAGG ATTTACGGGT GTTGCTCCTA
GGTGAAAATA GTGGTCGTAT CGATGATTTA ATCACTGCTA ACTTAAGCCT TAGAAAACTA
AAAGCTCAAG CTGAAGATAA AGCGGTAACA GCACGAGTAG CGGCATTAAC CAAAGGCGAC
AGTGAAAGAA ATCTTGCTTA TGGCGAGCGC ATAAAACTGC AAAGGGCGAG TTTGAAACTG
CCGTTACTGC CCACCACGAG TATTGGCTCT TTCCCACAAA CGCCAGCTAT TCGTGGCCTG
AGAAGTCGCT GGCGTAAGGG TGAAATTACT GAGTCCGCGT ATCAAGATCA AATTCGTCAA
GTGACTCAAG ACAGTATTAA ACGACAGCTC GATATCGGTA TCGATGTGTT GGTACATGGC
GAAGCTGAGC GAAATGACAT GGTGGAGTAT TTTGGCGAGC AGTTGGCAGG TTTTGCCTTC
ACTGAATTTG CTTGGGTGCA AAGTTATGGC TCGCGCTGCG TTAAGCCGCC ACTTATTTAT
GCCGATGTGT CGCGGCCAAC GCCTATGACA GTGGATATCA CCAGTTATGC CCAAAGCCTA
ACCTCAAAAC CCGTTAAAGG CATGCTGACA GGCCCTGTGA CTATCTTGCA TTGGTCATTC
GCCAGAGAAG ATATTAGCCG TGAAATGATT GCAAAGCAGA TAGCCTTGGC TATTCGTGAT
GAAGTGGTCG ATCTTGAGCG GGCGGGGATC CGTATTATTC AAATCGATGA GCCTGCGTTT
CGTGAAGGCT TACCAATTAA AGCTTCAGAC TGGGATGACT ATTTAGCCTG GGCTGTTAAT
GCATTTAGGC TGAGTGCATC AGGGGTCAAA GACAGTACTC AAATTCACAC TCATATGTGT
TATAGCGAGT TTAACGAGAC AATTGCCGCC ATTGCTGCCA TGGATGCTGA CGTTATCACC
ATAGAAACTT CGCGCTCCCA TATGGATTTA CTGGATGCTT TTGAGGATTT TCATTACCCC
AATGATATTG GCCCAGGTGT GTATGATATT CATTCGCCCA ACACACCTAC TGAGGATGAA
ATAGTGGCGC TTATCAACAA AGCGGCGACA AAAATACCCG TGAAGCAATT GTGGGTCAAT
CCAGATTGTG GTCTTAAGAC GCGCACTTGG GATGAAGTGG AGCCGGCCCT TAAAAATATG
GTCGCCGCGA CCAAAACTCT GAGGCGCAGC CTAGCTTGA
|
|---|
| Protein sequence | MKIANLGFPR IGRQRELKFA LEKYWRGELT QAELVQVADE LKRTHWQWQA DAGVELIPVG
DFAYYDQVLT LSATLNALPA RHREKDSQGN LLPICLDTLF RVARGRAPSG HQACAAEMTK
YFNTNYHYQV PELYEGQQFS IGFEQIFDEV TQAQQLGHQV KPVLLGPVSY LHLSKTLSSF
DKLSLLPSLV KTYAEILQRF AAQGVTWVQL DEPVLGLDLS PQWQQAVQWS YAELNKELNS
EQNGSKGNKI NLLLASYYAS IAHNQAWVSE LPVAGLHIDL VTAPEQLSLF ASKLKQDQVL
SLGVINGRNV WAADLPAIST SLAKLVTELE DRAWLAPSCS LLHTPVTLET ETKLAPELKA
QLAFAKEKLQ ELKDLRVLLL GENSGRIDDL ITANLSLRKL KAQAEDKAVT ARVAALTKGD
SERNLAYGER IKLQRASLKL PLLPTTSIGS FPQTPAIRGL RSRWRKGEIT ESAYQDQIRQ
VTQDSIKRQL DIGIDVLVHG EAERNDMVEY FGEQLAGFAF TEFAWVQSYG SRCVKPPLIY
ADVSRPTPMT VDITSYAQSL TSKPVKGMLT GPVTILHWSF AREDISREMI AKQIALAIRD
EVVDLERAGI RIIQIDEPAF REGLPIKASD WDDYLAWAVN AFRLSASGVK DSTQIHTHMC
YSEFNETIAA IAAMDADVIT IETSRSHMDL LDAFEDFHYP NDIGPGVYDI HSPNTPTEDE
IVALINKAAT KIPVKQLWVN PDCGLKTRTW DEVEPALKNM VAATKTLRRS LA
|
|---|
| |