| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0729 |
|---|
| Symbol | |
|---|
| ID | 4016645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 843047 |
|---|
| End bp | 845017 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637954714 |
|---|
| Product | TonB-dependent receptor, plug |
|---|
| Protein accession | YP_561742 |
|---|
| Protein GI | 91792091 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000181168 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTACTA AACCAACAAA AATTTCATTA TCCCTGACGG CCATTCTTGG CCTCTCTACG
CTGGCTTCAC CGCTTTATGC CGCGCCCGTG AGTGAGCAGG GTGTCAAACT TGATGACACT
ATGACTGTTA TAGGTCGCAG TGACAAATCC ACATTAAGCA TAGCCGCTAA TGTCACAGTG
CTTGATGCTA GCGACATTGA AACCAGTGGC GCCACCAATT TGGTGCAGCT ATTGCGCAGC
CGCAGTGGCA TACAAGTGAC TGACAGTAAT TCAGGCGCCG TGTTTGCTAT GCGTGGCTTT
AATGCCGAAC AAGCGGCTAA TAATACCTTA GTGTTGATCG ATGGACGCCG TCTTAACAAT
ATTGATATCG CCGCCCCAAG CTTAGATGCC ATTGCGCTTA ATCAAATTGA GCGGATTGAG
ATTTTGTCTG GCAGTGCCGG TGTGCTCTAT GGCGATCAAG CTGTGGGCGG GGTGATTAAT
ATTATCACTA AGTCTTCTGA GCATACCCGC GCTGGCTTAC AAGTCTCGGC AGGGAGTTTT
GATACCACTG AATACCAAGG TGATGTCGCA GGCGCGATTA ATGAGCAGTG GCGTTATGTG
GCGGCGGCCA ATTATAAAGA GTCTGATAAT TATCGCGATC ACAATGAAAG CGAAACAGGT
TCGGTTTTTG GCCGATTAGA TTATCAGTCT GCAGAGACGC ACTTTTATTC AGAAGTGAGT
TATTATGATA ACGATCGCCA GTTGACCGGC GGATTAAGCC AAGCTGAGTT TAACGCCAAT
CCAAGGAGAG CACCTTTAAC CAGTGTTGAT GACTATCAGC ATGAAATCGC CACGGCTGTG
CGCAGCGGTT ATCATCAACA AGCCTCAGAA AACTGGGTGC TGGGCGGTGA TATGAGCTAC
ACAGATTCAA ATACCCATTA TACTAATTTT GGTTTTGCAG GTGATAACAA GCGTAATCAA
TTGAGCGTAA TGCCAAAAGC TGTGGCGACT TTCTCTACCT CAAAGGGGAG TTTAGACCTA
GTGACGGGGA TTGATTATCA CTTAAGTGAG TCTGAATTTA GTTGGGGTCG CAGCAATACT
CAGACCCAGC AAGCGGCCTA TGTGCAAGCG ACAGTGCCAC TAGCCACCAG CCTGAGCTAT
GTTGTTGGCG GCCGCTATGC AAAGGCAGAA GATGAACTCG TCGATGGCAG TGCATATCCT
AATGGTGCCG AGCTTGATCA AGATGCTAAG GCCTTTGAGC TTGGGCTTAA TTACCGCCCT
TATGCATCCC AACGGTTATA TGTGCGCGCT GAAGATAACT TCCGCTTTGC TAAAGTGGAT
GAGCAAGCTT ACACCTCAGC AGGTGTGATC GGGCTTAAGC CACAAACGGG TCGCTCCTAT
GAGGCGGGTT GGGATTTGAT ACTTGCAAGT CACGTTGTGA AACTTAGCTT GTATCGCCTT
AGCCTTGAAG ATGAAATCGT GTTCGATCCT AGTGCGCCAA AGCCAAATGG CGGCTTCTTT
GACGGAGCTA ACGTGAATGC CGATGCATCA CGCCGCTATG GCGCGAGCGC CAATTGGGAT
TGGCAGCTGA TGACGGATTT AGCTTGGGGC GTTGAGTATC ATTATGTTGA TGCGCAGTTC
ACTCAAGGTG CAAACAAGGA TAAGGCACTG TCATGGGTAG CTTCGCACAG CGGCAGAAGT
TACTTAAGTT ATGACATAAA CGATGAATGG CAGTTCTATA CCGAAGCAAG TTATACCGGA
AAACGCTATT TAGGTGGCGA TAATGGTAAT CTTGAGCCAG AATTAGACAG TTATTTATTG
ACCAATATGG CACTACATTA TCGCAAGGCT ATGTGGTCAG CGAGTGTAAG GTTAGATAAT
CTCTTTGATG AAGAGTATGC CAGTGCTGGT TTTTATAGCG CATGGGGCAG CCACGGTTTT
TATTCTGGTG ATGGACGCAG CATTCGCTTA ACCGCGGGTT ATCGCTTCTA A
|
|---|
| Protein sequence | MGTKPTKISL SLTAILGLST LASPLYAAPV SEQGVKLDDT MTVIGRSDKS TLSIAANVTV
LDASDIETSG ATNLVQLLRS RSGIQVTDSN SGAVFAMRGF NAEQAANNTL VLIDGRRLNN
IDIAAPSLDA IALNQIERIE ILSGSAGVLY GDQAVGGVIN IITKSSEHTR AGLQVSAGSF
DTTEYQGDVA GAINEQWRYV AAANYKESDN YRDHNESETG SVFGRLDYQS AETHFYSEVS
YYDNDRQLTG GLSQAEFNAN PRRAPLTSVD DYQHEIATAV RSGYHQQASE NWVLGGDMSY
TDSNTHYTNF GFAGDNKRNQ LSVMPKAVAT FSTSKGSLDL VTGIDYHLSE SEFSWGRSNT
QTQQAAYVQA TVPLATSLSY VVGGRYAKAE DELVDGSAYP NGAELDQDAK AFELGLNYRP
YASQRLYVRA EDNFRFAKVD EQAYTSAGVI GLKPQTGRSY EAGWDLILAS HVVKLSLYRL
SLEDEIVFDP SAPKPNGGFF DGANVNADAS RRYGASANWD WQLMTDLAWG VEYHYVDAQF
TQGANKDKAL SWVASHSGRS YLSYDINDEW QFYTEASYTG KRYLGGDNGN LEPELDSYLL
TNMALHYRKA MWSASVRLDN LFDEEYASAG FYSAWGSHGF YSGDGRSIRL TAGYRF
|
|---|
| |