| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0692 |
|---|
| Symbol | |
|---|
| ID | 4016775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 800859 |
|---|
| End bp | 801539 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637954677 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_561705 |
|---|
| Protein GI | 91792054 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1392] Phosphate transport regulator (distant homolog of PhoU) |
|---|
| TIGRFAM ID | [TIGR00153] conserved hypothetical protein TIGR00153 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000000130211 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGTAA ACTCTATTTT AGGTGTGTTT GCAAAATCAC CTCTTAAGCC TTTAGAACAG
CATATCGACA AGGTGCATGA ATGTGCGTCA TTACTTGTCC CTTTCTTTGC TGCGACGACC
TCAGGTGACT GGGATGAAGC GGTAAGAATT CGCAAGCAAA TTAGCTTGCT TGAGAAAGAA
GCTGATTCTT TAAAGCGTGA AATTCGCCTT ACACTTCCAG GCGGTTTATT TATGCCTGTT
GAACGTACTG ACTTACTCGA GTTGTTAACT CAGCAAGACA AGATCGCCAA CAAAGCTAAA
GATATATCAG GCCGTGTCAT TGGCCGCCAA CTTGTATTGC CCGAAGCTGT TCAAGAACCG
TTCAATGCCT ATTTGAAACG CTGTCTAGAC GCAGTCTCTC TCGCCAAACA AGCCATTAAC
GAACTCGATG ATCTGCTAGA AGCAGGTTTC CGTGGTCGTG AAGTGAAATT GGTGGAAAAA
ATGATCAATG AACTTGATAT CATCGAAGAA GACTCGGATG ACTTGCAGAT CCAGGTCCGT
CGCAAGCTGT ACAGCGAAGA AGCCGGCCTG AATCCTGTCG ATGTGATGTT CATGTATAAA
ATTATCGAAT GGGTTGGCGG TTTAGCAGAT CTTGCTGAGC GCGTGGGTTC CCGCCTAGAG
CTAATGCTAG CTCGTAACTA A
|
|---|
| Protein sequence | MPVNSILGVF AKSPLKPLEQ HIDKVHECAS LLVPFFAATT SGDWDEAVRI RKQISLLEKE
ADSLKREIRL TLPGGLFMPV ERTDLLELLT QQDKIANKAK DISGRVIGRQ LVLPEAVQEP
FNAYLKRCLD AVSLAKQAIN ELDDLLEAGF RGREVKLVEK MINELDIIEE DSDDLQIQVR
RKLYSEEAGL NPVDVMFMYK IIEWVGGLAD LAERVGSRLE LMLARN
|
|---|
| |