Gene Sden_0689 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0689 
Symbol 
ID4016772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp795353 
End bp798547 
Gene Length3195 bp 
Protein Length1064 aa 
Translation table11 
GC content49% 
IMG OID637954674 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_561702 
Protein GI91792051 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000102631 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAACCA TTATGATGTT CAAAGCGAGT GAAGTATTGG CCGGCCGCTA TGACGATGCC 
ACTCTTGACC AACTTTTCCA AGCCGTGACC GACAACTATA TTGTCGATGA AGAAGCTTAT
CTCACAGAGC TTATCAAGCT TGTGCCTTCC ACTGATGAGC AAATTGAGCA GGTGACTCAA
CGCGCCCATG ATTTAGTCAG TAAGGTGCGT AAGTTTGAGA AAAAAGGCTT AATGATTGGC
GTCGATGCTT TCTTGCAGCA ATATAGCCTG GAAACTCACG AAGGCATTAT CCTTATGTGC
CTGGCTGAGG CCCTACTGCG TATACCTGAT GCGGAAACTG CCGATGCCCT TATCGAAGAT
AAGCTTTCAG GTGCCAAATG GGATGCTCAC TTAAAACAGA GTGACTCTGT GTTAGTGAAT
GCCTCGACTT GGGGACTCAT GCTCACGGGT AAAATCATCA AGCTAGATAA AAAGCTCGAT
GGCACCCCGA GCAACTTACT TAAGCGCTTA GTCAATCGCT TAGGTGAGCC AGTTATTCGC
CAGGCCATGT ACGCTGCCAT GAAAATCATG GGCAAGCAAT TTGTCTTGGG CCGCAATGTA
AAAGAAGCCC TCAATAACAG TGAAGCTAAG CGCAGTTTAG GCTACACCCA CAGCTACGAT
ATGCTCGGTG AAGCCGCACT CACGGACAAG GATGCCAAGA AATATTTCAA TGATTATAGC
AACGCCATTA AAGAACTTGG CGCTCAAAGC TATGATGAAA ATGAATCACC GCGTCCGACT
ATCTCAATTA AGCTTTCGGC TCTGCATCCA AGGTATGAAG TCGCCAACGA AGGCCGAGTA
TTAACTGAGC TTTACGCCAC AGTTATCAAG CTGATTGTGC AGGCTCGTGA GCTTAACATT
GGCATTTCAA TCGATGCCGA AGAAGTGGAT AGACTGGAAC TTTCCCTTAA ACTATTCAAA
AAACTATTTA ACTCAGTAGA ATCCCAAGGC TGGAATTTAC TCGGCATAGT GGTGCAAGCT
TACTCTAAAC GCGCACTACC TGTACTGTGC TGGTTGACCC GCCTTGCCAA AGAGCAAGGG
GATGAAATCC CAGTACGTTT AGTCAAAGGC GCTTACTGGG ACAGTGAACT TAAATGGGCG
CAGCAAGCAG GTGAAGCAGG CTACCCACTA TTTACCCGTA AAGCGGGCAC TGACGTGTCC
TACCTTGCCT GTGCACGCTT CTTATTGTCT GACGCCACTC GCGCTGCCAT CTATCCGCAA
TTTGCGACTC ATAATGCGCA AACTGTGGCC AGCATAGATG CCATGGCAAC GGATAGGAAC
TACGAGTTTC AACGTTTGCA CGGCATGGGC CAAGAGCTCT ATGACACGAT TTTGGCTGAA
AGCGGTGCCA AGACAGTGCG GATCTACGCC CCCATTGGTG CCCATAAGGA ACTATTGCCT
TACTTGGTTC GTCGTCTGCT AGAAAACGGG GCTAACACCT CATTCGTGCA CAAGCTGGTT
GACCCTAAAA CCCCTATCGC TTCGTTAGTG GTTCATCCTC TGGTCACCTT GCAAGCCTAC
AAAAGCCTTG CTAATAAAAA CATCGCTTTA CCCGCCGATA TTTTTGGCGC TGAACGTAAA
AATTCTAAGG GATTAAATAT GAATATCTTG TCTGAAGCTC AGCCATTTTT CGCCGCCATA
GATAAATTCA ATGACACTCA GTGGCAAGCA GGCCCACTGG TAGACGGTAA AACCTTAACC
GGTGATATTA ATACTGTCGT CAGCCCCTAT GATACCAAGC AGACTGTGGG CCAAGTGGTG
TTCGCCGATC AACAAGCCAT AGAGCAGGCG CTAGCCTCTG CCAGTCACGC CTTCCCTAGT
TGGGCCCGTA CTCCGGTAGA AACCCGCGCC AGCGCGCTGC AAAAACTTGC CGACCTATTG
GAAGAGAACC GCGAAGAGCT GATTGCACTT TGTACCCGTG AAGCCGGTAA GAGTATTCAG
GACGGTATAG ATGAAGTCCG TGAAGCCGTG GATTTCTGTC GCTACTACGC CGTTCAAGCC
AAGAAGCTTA TGGGTCAACC TGAGCTACTC CCAGGCCCAA CGGGTGAGCT TAACGAGTTA
TTCCTTCAAG GCCGCGGTGT ATTTGTCTGT ATCAGCCCAT GGAACTTCCC ATTGGCGATA
TTTTTAGGCC AAGTATCGGC GGCATTAGCT GCCGGTAACA CTGTCGTTGC TAAGCCTGCG
GAGCAAACCT CACTCATAGG TTATCGCGCT GTGCAGCTGG CTCACCAGGC AGGTATTCCG
GTTGAAGTGC TGCAATACCT GCCTGGTACA GGTGCAACCG TAGGTTCAGC CATCACAGCC
GATGAGCGCA TTGGCGGTGT GTGCTTTACT GGCTCGACAG GCACAGCCAA ACTCATTAAC
CGCACCTTAG CAAACCGTGA TGGCGCGATT ATTCCTTTGA TTGCCGAAAC CGGTGGTCAA
AATGCCATGG TGGTCGACTC AACCTCACAG CCTGAGCAAG TGGTTAACGA TGTAGTTTCA
TCTTCATTCA CCAGTGCTGG CCAACGCTGC TCGGCGCTGC GGGTGTTATT CTTGCAAGAA
GATATCGCCG ACAGAGTCAT AGAAGTGATG CAAGGCGCCA TGGAGCAGCT TGCTATTGGT
CACCCTGGCA AGGTGCAAAC CGATGTCGGT CCTGTGATTG ACGCAACAGC TAAAGCGAAC
TTAAATGCGC ATATCGATCA CATCAAGCAA GTGGGCAAGC TTATCAAGCA AATTCAACTA
CCAGCCGGCA CTGAAGATGG TCACTTTGTC GCGCCAATCG CGGTTGAAAT TGACTCAATC
AAGGTGTTAG AAAAAGAACA CTTCGGCCCA ATATTGCATG TTATCCGCTA CAAGGCCGCT
GATTTAAGTA AAGTGATTGA TGAAATCAAC AGCACAGGCT TTGGCTTAAC CTTAGGTATT
CATAGCCGTA ACGAAGGTCA CGCGCTTAAT TTGGCTGACA AAGTGAATGT TGGTAACGTC
TACATCAACC GTAACCAAAT TGGCGCCGTG GTTGGGGTAC AGCCATTCGG GGGTCAAGGC
CTATCTGGCA CGGGTCCTAA AGCGGGCGGT CCTCACTATT TGACCCGTTT TGTAACCGAG
AAAACGCGCA CTAACAACAT CACCGCCATT GGTGGTAATG CGACCCTATT GTCATTAGGC
GATAGCGACG AGTAA
 
Protein sequence
METIMMFKAS EVLAGRYDDA TLDQLFQAVT DNYIVDEEAY LTELIKLVPS TDEQIEQVTQ 
RAHDLVSKVR KFEKKGLMIG VDAFLQQYSL ETHEGIILMC LAEALLRIPD AETADALIED
KLSGAKWDAH LKQSDSVLVN ASTWGLMLTG KIIKLDKKLD GTPSNLLKRL VNRLGEPVIR
QAMYAAMKIM GKQFVLGRNV KEALNNSEAK RSLGYTHSYD MLGEAALTDK DAKKYFNDYS
NAIKELGAQS YDENESPRPT ISIKLSALHP RYEVANEGRV LTELYATVIK LIVQARELNI
GISIDAEEVD RLELSLKLFK KLFNSVESQG WNLLGIVVQA YSKRALPVLC WLTRLAKEQG
DEIPVRLVKG AYWDSELKWA QQAGEAGYPL FTRKAGTDVS YLACARFLLS DATRAAIYPQ
FATHNAQTVA SIDAMATDRN YEFQRLHGMG QELYDTILAE SGAKTVRIYA PIGAHKELLP
YLVRRLLENG ANTSFVHKLV DPKTPIASLV VHPLVTLQAY KSLANKNIAL PADIFGAERK
NSKGLNMNIL SEAQPFFAAI DKFNDTQWQA GPLVDGKTLT GDINTVVSPY DTKQTVGQVV
FADQQAIEQA LASASHAFPS WARTPVETRA SALQKLADLL EENREELIAL CTREAGKSIQ
DGIDEVREAV DFCRYYAVQA KKLMGQPELL PGPTGELNEL FLQGRGVFVC ISPWNFPLAI
FLGQVSAALA AGNTVVAKPA EQTSLIGYRA VQLAHQAGIP VEVLQYLPGT GATVGSAITA
DERIGGVCFT GSTGTAKLIN RTLANRDGAI IPLIAETGGQ NAMVVDSTSQ PEQVVNDVVS
SSFTSAGQRC SALRVLFLQE DIADRVIEVM QGAMEQLAIG HPGKVQTDVG PVIDATAKAN
LNAHIDHIKQ VGKLIKQIQL PAGTEDGHFV APIAVEIDSI KVLEKEHFGP ILHVIRYKAA
DLSKVIDEIN STGFGLTLGI HSRNEGHALN LADKVNVGNV YINRNQIGAV VGVQPFGGQG
LSGTGPKAGG PHYLTRFVTE KTRTNNITAI GGNATLLSLG DSDE