| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0688 |
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| Symbol | |
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| ID | 4016771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 793524 |
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| End bp | 795305 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637954673 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_561701 |
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| Protein GI | 91792050 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.241992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCATGG CACAAGAGAC AAAGAGACAA GCAGACCAAA GCAGGTTACC ATTGCCCCTG
CTTATGCCAC CAACGCCAGA AACCTTTATG CCTTCTATAC CCACTTGTTT TACGCCCTTT
AACGCCGCAA TTGATCATCA CCCATTACCC GAACGCTTTA CCTTCCCGTT TTATTATCAG
CCGCATCCCT TGTGCATTCT GGCAGCCGAG GAGTTACAAC AGCATCTGTT GCAGCAAACC
CAGTGGCAGC ATAACTTTGG GCTAACTGGT GATAAACATA ATGTCATAGG TAAGATGTTT
GGCGTAATGC TAGTGCAAAA CAGCCAAGGT GAACTTGGGT ATCTGGCGGC ATTTTCTGGC
AAGTTAGCCA ACAGCAATCA TCTACCAGGT TTTGTGCCTC CTGTGTTTGA CATGCTGGAA
CAAGATGACT TTTTTCTCGC TGAAAACCGC CTGATAAATG AAATAAATCA ACAGATTGAG
AAAAAAGAGC AAGACTCAGA ACTGCACAGG CTCAGCCAGC TTAAGTGCCA GCTAGTACAA
GCCGCCACGG CAGCGCTCAA CGCCCAAAGG GATATCATGA TCCAAGGGCG AAAACACAGA
AAAGCTCAGA GAGCCGCATT AGCTGCCGCG CCCCAGAGTG CACAGACACC GGCCGCAGAG
CTCGAGCTTA ATCAGCAGAG TGTGGCTGAA AAACTCCAAT TGCGGGATCT GAAGCTGAGC
TGGGATAAGC GCATAGATAG CGTGAGCACC GAGCTAAATG CACTGAATGA TGCACTACAA
GCACTTAAAC TTGAGCGTAA GCAACGCTCC GGCGCGCTGC AGCAGAGGCT ATTTTCTCAG
TACACTTTTT TAAATGCCAA CGGCGCCCAC AAAAGCTTAG GCGATATTTT TGCCGCCACT
GTGGAGCGCA CCCCACCTGC GGGAGCGGGC GAGTGCGCGG CACCTAAGTT GCTGCACTAT
GCTTACAGCC ACTCACTCAC GCCGCTGGCC ATGGCGGAGT TTTGGTGGGG CACGCCGCCT
AAATCTCAAG TGCGTCGTCA CGGGCAATTT TATCCCGCCT GCCTAAGAAA GTGCCACCCT
ATCCTAAGCC ATATGCTAGA AGGCCTAAAG GTGGATCCCA ATCCATTATT GGAAAACCCC
GCAGATGATA AGCAGATCAC TGTCATCTAT CAGGATGAAC ACTTACTGGT CATCAGCAAG
CCAGCTGAGT TTTTATCTGT GCCAGGGAAA AACATTAGCG ATAGCGTGCA CACCCGTATC
ATTCGTGACT TTCCAAGTGC CAGTGGCCCC ATCATAGTGC ACAGGTTGGA CATGTCGACC
TCAGGGCTTA TGGTGATCGC CCTTAATAAA GAGGCCCATG AAAGTCTGCA AAAACAGTTT
ATTCTCCGCA CTGTCACTAA GCGATATATC GCTCTACTGG ATGGCCTATT ACCCAATAGA
ACCGCCGGAG ATGAAGGCAT CATATCCCTG CCCCTTCGCG GGGATTTAGA TGACAGGCCC
AGACAATTGG TGTGTCATGA GCATGGAAAA AGCGCCGAAA CCCGCTGGCA GATAATAGAC
ATTCAGCAGG GACGAACTAA GGTGTTCCTC TACCCTAAAA CCGGTCGCAC TCATCAGTTA
AGGGTCCATT GCGCCCATAG CCAAGGCCTG CATCTGCCGA TTGTCGGCGA TGATCACTAT
GGCGTGCGTG CTAGCCGATT GCATCTACAT GCTGAGTCTT TAAGCTTCAC CCACCCACAA
AGCCGTGAAG CACTGCATTT CCAGCTTGAT GCAGACTTTT AA
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| Protein sequence | MPMAQETKRQ ADQSRLPLPL LMPPTPETFM PSIPTCFTPF NAAIDHHPLP ERFTFPFYYQ
PHPLCILAAE ELQQHLLQQT QWQHNFGLTG DKHNVIGKMF GVMLVQNSQG ELGYLAAFSG
KLANSNHLPG FVPPVFDMLE QDDFFLAENR LINEINQQIE KKEQDSELHR LSQLKCQLVQ
AATAALNAQR DIMIQGRKHR KAQRAALAAA PQSAQTPAAE LELNQQSVAE KLQLRDLKLS
WDKRIDSVST ELNALNDALQ ALKLERKQRS GALQQRLFSQ YTFLNANGAH KSLGDIFAAT
VERTPPAGAG ECAAPKLLHY AYSHSLTPLA MAEFWWGTPP KSQVRRHGQF YPACLRKCHP
ILSHMLEGLK VDPNPLLENP ADDKQITVIY QDEHLLVISK PAEFLSVPGK NISDSVHTRI
IRDFPSASGP IIVHRLDMST SGLMVIALNK EAHESLQKQF ILRTVTKRYI ALLDGLLPNR
TAGDEGIISL PLRGDLDDRP RQLVCHEHGK SAETRWQIID IQQGRTKVFL YPKTGRTHQL
RVHCAHSQGL HLPIVGDDHY GVRASRLHLH AESLSFTHPQ SREALHFQLD ADF
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