| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0666 |
|---|
| Symbol | |
|---|
| ID | 4016943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 766612 |
|---|
| End bp | 768459 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637954651 |
|---|
| Product | TonB-dependent receptor, plug |
|---|
| Protein accession | YP_561679 |
|---|
| Protein GI | 91792028 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAC AATTATTCGC GCTCACGCCC TTATTATTGT GTGTCTCTAT GGCCAGCCAA
GCTAGCGATA TGGCGCTAGA TATCACTGGA ACCAATGTGT TCCAGCTAAT GAACCTTAAA
ATTACCTCCC TTTCAAAAAA ACAACAGTCA CTGAATAAAG CGCCCGCGGC TGTCTATGTA
CTTTCTCATG ATGAAATCGA ACGCCTTGGG GTGTCACGTA TCGCCGATGC ACTGCGTTAT
GTGCCAGGTG TTGAAGTGGC GCGCATCGAC GCGAGTCGCT GGGCCATCAG CATGCGCGGC
TTCAATGGTC GCGCCGCCAA TAAGTTATTA GTCATGATCG ATGGTCGCAG TGTGTATAGC
CCGTTATTTT CTGGTGTCCT GTGGGAAGAA AAAGACATTT TACTGGCCGA CGTTGAGCGC
ATCGAAGTCA TACGTGGCCC AGGTGGCGCT ATATGGGGCG CCAATGCGGT TAATGGAGTC
ATCAATATCA TCACAAAAAC CGCCAAGGAA ACTCAAGGCA CACTAGTGGA TGTATCAACG
GGGCTTAAAC AACGCCAAGT CACCCAAATT CGCCACGGTT GGAAGCTCAA TGATGATGCC
TATCTAAGAG TCTATGGCAA ACATCGTCAG CATCAACAAA CCAATGATGA ATACAACAAT
GATGATAACC AACAGAACCA GTTAGGCTTT CGCTTAGATT ACAATTTTTC AACCGACAAC
CTGTTAACTC TACAGGGTGA TATCTATTCT GGGGAAGTTG GCGAATTAGA TGGGCAGCTT
AAACCTGCTG GGCAAGAGCA TTCCGGCGGT AATTTCCTTG CCAACTGGCA AATCACTGAC
AGCCACCAAG GTAAACACAC AGTAATTGGC TATTACGATA ACACTCACCT CCAAGTACCT
GGTCTTGAAG ATGATAGAGA ATTGCTGAAT CTTGATTATC AATTCGAACA GCAGTGGCAA
CTGCATGCAT TCGTTACTGG ATTCGGCATT CGCTTCCTCA GTGACGATGT TTACACTGCG
CCCCTCGAAT ATATTCAACC CCGCTATCGT GACGATCAAG TGGTCAATGC TTTCTTTCAA
GATGACATCG CCTTTTTAGA GGATGATCTG CATCTCATTA TTGGCACTAA ATATGAGCGC
AATGATTACT CAGGTGACGA GTGGCAACCC AGTGTGCGTT TCTCTTATCA ATTAGCCCAA
TCTTTACTTT GGGGAGCTTG GTCTAAAGCG GTGCGAGTGC CAACCCGATG GGAAGCCGAT
ATTCGCTTTG GGGCTTTTAG TGGCGAGAGG CTAAAGCCAG AAAATGCCAA TGTCTATGAA
CTTGGCTGGC GCAAGCAATG GACAGAGACA GGGTCACTAG ATATTACAGT GTATCAAAGT
GACTATGATG ACTTATTATC CATAGAGGCC AATGGCTATG GCAATCAAAT CTCTGGCACA
GTGAAAGGCA TAGAGTTAAG TAGCAGTATT CAAGTACAGC AAGATTGGAG CCTCAGACTC
AATCTGTCAC ATGCTGCTAT GGCGCTTACC GCACAGCAAG GCAGTTTGTC TGTGGCCAGA
GCCCAACTCA CAGAAGGACA AATGCCTAAA AACATGGCGC AAATTATCTC CATGTGGGAC
ATCAACTCAC AGTGGCAATT TAATACCGCC TTACGTTATG TGGATGAACT TAAAAGCAAC
AAAGTCGATG CCTATTGGAG TGTCGACGCT TCTGTTAATT GGCAAGCCAG CAAGCAATTC
TCCGTTAAGT TAGTGGCGCG CAATTTAGGA GATGGACCGC ATCAAGAGTG GGATCCCTAT
GTGCCGATAG AAGCCGACGT TGTCATCAAC TTAAGATGGG AAATTTAG
|
|---|
| Protein sequence | MKQQLFALTP LLLCVSMASQ ASDMALDITG TNVFQLMNLK ITSLSKKQQS LNKAPAAVYV
LSHDEIERLG VSRIADALRY VPGVEVARID ASRWAISMRG FNGRAANKLL VMIDGRSVYS
PLFSGVLWEE KDILLADVER IEVIRGPGGA IWGANAVNGV INIITKTAKE TQGTLVDVST
GLKQRQVTQI RHGWKLNDDA YLRVYGKHRQ HQQTNDEYNN DDNQQNQLGF RLDYNFSTDN
LLTLQGDIYS GEVGELDGQL KPAGQEHSGG NFLANWQITD SHQGKHTVIG YYDNTHLQVP
GLEDDRELLN LDYQFEQQWQ LHAFVTGFGI RFLSDDVYTA PLEYIQPRYR DDQVVNAFFQ
DDIAFLEDDL HLIIGTKYER NDYSGDEWQP SVRFSYQLAQ SLLWGAWSKA VRVPTRWEAD
IRFGAFSGER LKPENANVYE LGWRKQWTET GSLDITVYQS DYDDLLSIEA NGYGNQISGT
VKGIELSSSI QVQQDWSLRL NLSHAAMALT AQQGSLSVAR AQLTEGQMPK NMAQIISMWD
INSQWQFNTA LRYVDELKSN KVDAYWSVDA SVNWQASKQF SVKLVARNLG DGPHQEWDPY
VPIEADVVIN LRWEI
|
|---|
| |