| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0637 |
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| Symbol | |
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| ID | 4017012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 737587 |
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| End bp | 740337 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637954622 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_561650 |
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| Protein GI | 91791999 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0978738 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACCA AGCCGAGTTT TACCGTCAAT AAGCTAAGTC TTGCCATTGC CTCATTGATT
TCAGTGGCCA GCGTATTTCC AGCCTTACCC GTATACTCGC AAGACGCTGT GAAAATAGAA
CACAGCGAAA TCAATGCTCA ATCAACAGAA ACCGCTCAAT CAACTCAATC TACTGAATCA
AGCCCGTCAG CTCAGGGTGA ATCCTTCCCC ATTGAGCCCA TTGAAGTGAT TTCAGTGGTG
GGGCGACTGC GTACCTCGGC ATCGGCGGCG ACTGAAGAGC GCCGTGAGCA AGTTAACGTC
ACGGATATCA TGGGCGCAGA GCAAATTGCC AGAACCGGTG ATGGTGACGC CGCCGCAGCC
CTTAGGCGGG TAACGGGTTT AACCCTAAAA GATGGCAAGT TTATTTATGT TCGCGGCCTA
GGGGAGCGCT ATTCCAGCAC CTCACTCAAT GGCGCAACTG TGCCATCGCC CGATCCCACC
CGTAACGTGG TGCCTTTGGA CATGTTCCCG GCCTCAATTA TTGAGTCTTT ATCGGTGCAA
AAGTCGGCTT CAGCCAATGC GCCAGCGGCC TTTGGCGGCG GGCATGTGGA TATACGCACT
AAATCGATTC CGGCAGACTT CTTCTTTAAA GCTTCGGTAG GCGGGCGTTA CAACACTAAC
GACACAGATG ATGCTCTAGG TTATAGCTTA GATAACAGCG GCTTAGGTAA AGATGATGGC
AAGCGCGCCA TGCCTGATGC CATTGCCAAT ACCACTAATC AGTATGGCGG CATAAGCCCC
ATTGATATTG TTACCGGCTC TCAGGGCGGG ATTAATTATC CTGCGGCGCA GCAGCTTAAC
CGTGAACTTG CCCTTGGCAT GCACAGGGAT ATGACAGTGC AGGCTCAGGA TAGCTCACCT
GGCTTTAAAG GGGATATTGC CATCGGCGAT CGCTGGGATC TCAGTGATGA GATGATTCTT
GGCGTTATCT CGGCGTTTTC TTATAAAAAG CAGCAAGACA ACTACCGTAA AAAAGAGCTT
GAGCTTGATG GTGATGCCAG CAATATTAAT ATCGAAAACC AAAAAGACAT CATGGGCACA
GACTCAATCG TGCAAGTTTC GGGCATGGTG AATTTAGGTT TAGAAATCGG CTATAACCAC
AAAATTGAAA CCTTCACTAC TTATCTGCAC GATACTTCAG ACGATGTGTC CATGGGCATA
GAAGAGACCA TAGATACCTT AGGTGAACCC AATGCCTTGC AAATATTCGG CATAGGTTAT
GAAGAACGTA GTCTTATTAG CAATCAGATA AAAGGCCATC ATTTTATTGA ATATTTAAAT
GATGCCGAAT TTAATTGGAA GTTTTCCGAT GCGCGCTCAG AGCGTTATGC GCCCAATGAA
ATGTCATATA CCTATAACGT GATTTTAGAT GATGCTAACA AGGTGTTATC GCGCAATTTG
AACACTCAAG ATGCGCCTAA ATATGTCTAT AGCCGCTTAG AAGATGACAG CCAAAACTAT
GGCTGGGATG TAAGCTACCC CATCAACTTT GATGGCGCCC TGGTTAAAAT CACCACAGGT
TATGAATACT TTGAGCGTAG CCGTGAAAGC TATGCCACCC GTTTAGGCTT TGACGTGGAT
TTAAGCCCAA GTGATGTTAA TGGCGGCATA TTATCTCAAG ATTTTAATCA GATTTTCTCA
AATGCCAATA TCAGCAGTGA TGTCTTAGGT TTAGAGCTTA AAGACGCCTC AACCGATACC
GAAGATTATA TTGCCGCCGA GATGAATGAC GCGGCGTTTA TCAGCCTAGA TATCGACTTT
GAAGATGTGT GGCGGGTGTA CGCTGGGGTG CGTTATGAAG ACTTTAGGCG GGTCACTTTA
CCGATAGATC CAGAGGGCAA AATATCCGAT GAGGGCGGCC GTTATCAGCT TGATGATTAC
GCCATCGCTG AAGACGCTTG GTTCCCTTCA ATATCAGTAA CCTGGAAGCA AACCGATACT
ACTCAGTGGC GCCTTGGCGC GAGCAAAACC TTAGTGCGAC CAGATTTACG CGAAGTGTCA
CCGGTGCGCT TTCAGGACCC AGTTACAGGC TTTGATTTTT TCGGCAATCC AGAGCTTAAA
AGCTCAGACA TTTATAACCT AGATTTACGC TGGGAATACT ATTCAGATTC GGGCAACAAC
TTAAGTGTTG GTGCTTTTTA TAAGGATGTG GATGCGCCCA TTGAGCCTAT TCAGCGGATC
TCAGAAGCCG GACGTCAGCT TAAATTTTAT AATGCTGAAT CTGGCTACAT TTACGGTATC
GAAACTGAGT TTTTACAGCA GTTAGGCTTT TTGGGCGATG AGGGCAGCCT GTGGGAGGAT
TTCTTTATCG CAGGCAACTT AACCTTAGGG GATTCGGCCA TAGATATCGC CAGCAATGGT
GAAATCGACC CAACACATCA TTCACGAGTC ATGACTGGGC ACTCAAAATG GGTGGCCAAT
ATGCAGCTAA GTTATGACTC CTCAGATGAC TACCACAGTG CCACCTTGGT TTATAACATT
TTTGGTGAGC GCATTGCTTA TGGTGGTCGC GGCGGGCTTG ATGATGTGTT TGAACAACCT
TTTAACAGCC TAGATTTCAC CTACAGCTTT TTCCCAACCG ATAGCATAAG CATCAAGCTG
AAGGCGAAGA ATATGCTCGA TGAAACCACG GAATACAAGC AGCAAGGCCA GCTGGTCTAC
GCCAAAGAAC CGGGCACAGA ATACAGCCTG CAGTTTAGCT ATGAGTACTA A
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| Protein sequence | MKTKPSFTVN KLSLAIASLI SVASVFPALP VYSQDAVKIE HSEINAQSTE TAQSTQSTES
SPSAQGESFP IEPIEVISVV GRLRTSASAA TEERREQVNV TDIMGAEQIA RTGDGDAAAA
LRRVTGLTLK DGKFIYVRGL GERYSSTSLN GATVPSPDPT RNVVPLDMFP ASIIESLSVQ
KSASANAPAA FGGGHVDIRT KSIPADFFFK ASVGGRYNTN DTDDALGYSL DNSGLGKDDG
KRAMPDAIAN TTNQYGGISP IDIVTGSQGG INYPAAQQLN RELALGMHRD MTVQAQDSSP
GFKGDIAIGD RWDLSDEMIL GVISAFSYKK QQDNYRKKEL ELDGDASNIN IENQKDIMGT
DSIVQVSGMV NLGLEIGYNH KIETFTTYLH DTSDDVSMGI EETIDTLGEP NALQIFGIGY
EERSLISNQI KGHHFIEYLN DAEFNWKFSD ARSERYAPNE MSYTYNVILD DANKVLSRNL
NTQDAPKYVY SRLEDDSQNY GWDVSYPINF DGALVKITTG YEYFERSRES YATRLGFDVD
LSPSDVNGGI LSQDFNQIFS NANISSDVLG LELKDASTDT EDYIAAEMND AAFISLDIDF
EDVWRVYAGV RYEDFRRVTL PIDPEGKISD EGGRYQLDDY AIAEDAWFPS ISVTWKQTDT
TQWRLGASKT LVRPDLREVS PVRFQDPVTG FDFFGNPELK SSDIYNLDLR WEYYSDSGNN
LSVGAFYKDV DAPIEPIQRI SEAGRQLKFY NAESGYIYGI ETEFLQQLGF LGDEGSLWED
FFIAGNLTLG DSAIDIASNG EIDPTHHSRV MTGHSKWVAN MQLSYDSSDD YHSATLVYNI
FGERIAYGGR GGLDDVFEQP FNSLDFTYSF FPTDSISIKL KAKNMLDETT EYKQQGQLVY
AKEPGTEYSL QFSYEY
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