| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0628 |
|---|
| Symbol | |
|---|
| ID | 4017003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 718975 |
|---|
| End bp | 724488 |
|---|
| Gene Length | 5514 bp |
|---|
| Protein Length | 1837 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637954613 |
|---|
| Product | amino acid adenylation |
|---|
| Protein accession | YP_561641 |
|---|
| Protein GI | 91791990 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTAG GAACAATTGA TTTAGGCGAA CAGTTACGGG TTCATAAGCG AGTAAAAGAC
AGTCCAAATG GCAATAAAAC AATTTGGGAC GCGTTTGAAA CGCTGGATTC AAACCACTCA
AGCGAGGTTG AACGTGTTGA GGAGGAGATA ATCTTACCTG ATGGGCTGAC AGCTTCTTTC
AATGATCTCA CTGCTATTGC GGCCATGTTG GGCTCCTTGT TAAGTCCTGA AGCTTGTATC
AATGTTGGCT TATTCGCTGA TGGATTGGCA ACCTGTGTTG AGGTTGATGC TAATGACCTA
TGCCATAGCC ATAACGTCAA GGCTTACCTT GCTGAGCAGC GCTTGTCTAA AGAATTGCCA
AGGCGTGACG TTACTGCTCG TGTTGATATA GAGGTAACGG ACGGAACCAT TAACCCACCT
ATCACCTCAT TGGTGTGGTT TTTAGCACAA AATGGACGGT TTTTGTTATC AGTAAGACAA
GATCGCATCG ATTTATCAGC ACGTATGCAG CTACGAAAAT TAATAGCCTT TGCCTGTGCG
CGGGTATTGG ATCCTAGGGC AATCCCAACC TATGATGCCA TGCCAACTCG CCGTCACGAT
AAATGCCATC AATCTAAACC CTTGGTAGAG CTTGTCTTCA AACATAAACA GCTGCGCCCC
ACTGCCCTAG CCATTATAGA CAATACCAGT AGCCAAACAT TGACTTATGC CGAGCTTTGG
CATGCCTCCA GTGTCATATT GCAACAGATA TCCGAGCAAG TGAACCTCAG CCGAAAACAC
CCAAGAATTG CATTATTCAT GGAGCGAAGT TGGCAACATT TAGCCTCGAT AATCGCGATT
CAGCGCATGG GGGGCACCTG TGTACTGATC GATCCTGTAC ATCCTGATTA TAGGATCAAC
TCCTACATAG AGGAATGCGC TCCAGACGCC ATACTTGCAG CAGCCAGCAC CACAGCTAGA
GCAGATAATT TGTCTGGCTA CACTGTGATT AATATTGGCA AAAAATATCT GCAGCTCTCT
CAGCTTGACC GTAAATATGC TGACTGGGTC AAGACCACTG AGCAAGACTG TTTTATCGCT
GAAACATCAG GAAGTACTGG GCGTCCGAAA GCGGCTCGGC TGTCGTACAC AGGCATGGTC
GCAACCATTG GCACCATCAT AGATTATACG GCGCTAAACG AACGCTCAAG AGGCTCTTGG
TTATCGTCTC CAGGATACGG CATGGTTGAA GTTGACCCTT TACCCGTCCT TGGTGCTGGC
GGCACTGTGT GTATCCCCTC CTCTGAGGTT GTAAAGGATG CTCGTTTACT GGCGCAGTGG
TTTAAAAAAC ACAATGTAAC TCATACCTTA GTCATGACAT CCATTGCAGA AACACTGTGG
GCCAATGAAC AGCAACTTGC GCTAAATACC ATGTTAATTG CTGGTGAACG TTGTAAGCAG
TGGCCACCAA CATCCCTTAA TTACCGAGTA CTTAATGTCT ATGGTTCAGC GGAAGCGGCT
GTGGTTTCCA TTGAAGATCT TTCAGCGACT CGGCGCACCT TATTACCTTC GACAGGACGG
GCAGTGCCTG GGGTGAATTT GTATATTGTG GATGAGCATG GCCAAGAGTT GCCCGCCAAT
TGTATTGGTG AGCTAATTAT CACAGGGTCT ACCTTGTCCA TCGGTTACCT TAACGATCAA
GATACCGTGA AGAATTTCCA CTCGAATAAA CTCGATAGTA GTTCAGCGCT ACAGTATACC
TCAGGTGACA GAGCTCGGAT GCGTTTAGAT GGAACGCTAG ACATTTTCGG ACGCTCTGAC
GCTGTGGTAA AGATCAGAGG AAACAGGGTG GATCTGGCTG AGGTGGATAT CACCGCACTC
GAAGTTGAAG GGGTGATAAA GGCTGCCACT ACCAGTATCA CAGATGATAC AGGAACAACC
TTAGTCCTGT TTGTTGAGCA GGCTCCTGGA GCCGCCTGCG TTGTGGAGGC TGTGCGTCAG
CATCTTGGTG ATAGGCTGCA ACCCGCCGCT CAGCCAAGTC AGATCGTTTC AGGAATACTG
CCACTTGGAA GCAATGGCAA GGTTGACTAT AGCGCGTTAC GATCGGTTAA GATCAAACGA
GATGCTAATC AATTAGTCTT TTATCCCAGC ACAAAAGTTG AAACGGCTGT GCGTGATTGC
TGGCTCACCT GGACCCGCTC AGATGAAGCC ATATTAACAT CCAGCTTTTT TCAATCTGGT
GGAGACTCAT TACGAGCCAT GCGCTTAGTG GGTGAGCTTG CTTGCAAGCA CGGGATCAAC
ATTGAAATGA GTGCGTTCAT TGGCAATCCT GTTCTATCCA ACCTAGTGCA ATTAGCCAAT
GCATCCAAAG AAGCACATCT GCCCCAATTT GATAACTTAG CCGCCAATGA ACAACTATTA
CCCTTTGAGC TCAACGAAAG TCAGCAGGCG TTATGGATTG GTCGCGGTGC TGATTTCGAT
TACGGAGGTG TAGGCTGCCA AGGGTATTTC GAATGGGAGG TGAAGCAGCT TAATCATAAG
AATTTTGTGC GTGCTGTGGG GTTATTAGTC GCCCGTCACC CTATGCTTAG AATGACGATT
GATGACACTG GCAAACAGAG GATCGGAGCA GTTGATGGCA CCCAGGCGGT TAAGTTTGTT
GATTTAAGTG AGCTTCCACA GAGCAAAATT AACGAAGAAA TTGATCTCAT TCGAAGCCAG
ATGGCAGACG AAGAGATTGG TACGAGCCAG TGGCCTTTAT TCCAGTTTAA GGTAAGCAAA
ATCAGCAGTG ATTTAAGCAG AATTCATTTT TGTGTTGATA TGCTAATTGC CGATGCATGG
TCGATTTTTC AAGTGATCAT TCCAGATCTG ATAGAGCTTT ACAAGGATGA TAAAGCCCAG
CTACCTGAGC TCAAAACCAC CTTCAGTGAT TATGTTGCCT ACAGACACAA GGTGGTTAAA
AGTGAGCGTT ATCGCGCGGA TAAAGATTAC TGGCTACAAA AAATCACTCA GCTGCCGGCC
GCGCCTAAAT TACCACTGCT CGAAAAGGGT GAATCATCTT TAATCCAAAA GTTTCAACGA
CATCACAGTA CCCTAGAAAA AGACAGCTGG GATCAGCTCA AGGCACAGGC CCAAAAACGC
AACATATCTC CGTCAGGGGT AGTGGCTTTG GCGTTATGTG AAGTATTGCG TTGTTGGAGC
GAAGAACGTC AATTTACCTT GAATTTCCCT GTCTCAGACA GGATGCCTGT CAGTGATGAC
ATAGACCTGG TCGTGGGCGA CTTCACTAAT ACACTATTAG TCCCCTATGA GCCTGTTGCC
AATGAAACCT TCGAGGTCCG TGGCCAGCGA TTGCAAAACT CGATTTGGCA AGCACTTGAT
CACAGACTAT TTACTGGCGT CGAAGTATTA CGTGAGTTAT CAAGATTTCG CCAGTCAGGG
CTAACTCCGC TTATGCCCGT GGTTTTGACC AGCCTGCTTG GGCACCCTGG TCGACATGAT
GTGTCCCTGC TGGGACGTGA AGTATTCGGT GTTTCACAGA CCCCACAGGT GACACTGGAT
GTCCAGATCC GAGAATCACA GGGCACGCTT TATTTCAAAT GGGATTACCT TTCAGGGGTT
ATTCGACCAG ATGTGATAGA GGCGATGTTT GAGGCATTCT GTGAATTCCT ACAAGAACTC
TCAAAGGATC CCCAAGAGTG GGATCGCACA GAGCGTGAAT TTAGACCCCA AGCACAAATA
GCAATACGCA ACTCAGTGAA CATGACAGAG GCTGCAGTAC CACAAATTCA CTTGCGCGAT
ATGCTGTTAG CACGCGTTAA AGACCCTGGT AACGCGTTAG CGTTAATTGA TGCTAATCAT
AGCTACACTT GGGCTGAGCT AGGCAATGCG TCTGCACATA TTAGCCAGCT TATGAAAGGC
GTTTCTAAGC CGAATGATCA GTTTGTTGGC ATCATACTCC CAAAAGGCGT TTTACATTAC
GCCAGTGTTT ACGCTTGCCT ATTGGCGGGG CTGGGCTACG TCCCCATAGA TATCGATCTG
CCTCCTGAGC GGATGCGAAA AATGCTTGTT AAAGCAGGGG TTCGCGCGGT GATCACGGTT
CCTGGCGCTA TAACACCTGA TGGTTTGCAA AAGATAGAGC TGACAGCTCG TGATTTTGAG
GTTTGGGCGA AACAGCCGAT GGACTTCGAA CTCGCACCGG TCCCACAACA CTACGTACCT
TATGTGATCT TCACTTCAGG CTCTACCGGG GAACCTAAGG GCGTTGAAAT CCCAGAAATA
GCAGTCGTTA ATCACGTATA TGATGTGGTC GAACGCTTCG CTTTGGATAA TTCCAGTAGG
CATCTTGCTA CCGCTGCTTT GCATTTCGAT ATGTCAGTAT TTGATATTTT CGGTCCACTA
TTACATGGGG GCTCAGTTGT GATGCCTGAA CCCGCAGCTG GGCCTGATCC AGAAGCTTGG
CTACGACTAC ATCATAGACA CCAGGTCACA TTCTGGGCAT GTGTGCCTGC CATCATGGAC
CTGTTATGTA CCGTCGCTGA AACAGCAAAT ATAACTCGGA TAGTCGATTC CGTAAAAAAC
ATAGTCATGG CTGGAGACTG GATACCACTT TCACTGCTTC CTCGGGCCAG AGCTTTGTTC
CCATCGGCCA CCCTGTATTC CTGTGGAGGG CCAACTGAAA CCACAAACTG GTCAGTGATC
CATGAGATCC ACCATGATGA AGGCAGCATT GCTCGTTCCG TGATTTATGG AAAACCAATG
ATGAATTCCA AATATCATAT TGTCGCTGAT GATTTGGCTG ACCGTCCAGA TTGGGTGCCA
GGGGAAATGC TAGTAGAGAG TGATATTTCG CTAGCAAATG GCTATATCGG CCAGCCGGAA
CTGAGTCAAC AGACATTCAT TTTCCACCCA AAAACAGGAC GTAGGATGTA CCGTACAGGG
GATCTGGGAC GTTACTTGCC TAACGGCGAA ATAGAGATCT TAGGTCGAGT GGATAATCAA
ATCAAGATCA ATGGCCTCAG GGTTGAACTG GGTGAAATCG AAAATGTGTC ACAAAAATGT
TCAGGTGTTT CAAGAGCCTG CGCAGTAGCA TTGCTCGGCT CGGATGGACG GCCAAAGCAA
ATCGCATTGG CTTATATTGG CAAGGCTAAT CTCGAGCCTG TGATCCATGC TGCACTCATA
GCCAGCTTAC CTACATACAT GGTACCTAAG GTTATCCAAC AGCTAGATGA ATTACCCCTG
TCTAAGAATG GAAAAGTAGA TATTCGAACC CTCCGTGAAA TATTAAGGAA TGATATGAAA
GAGCAAAAGC CAAATAACAC CAATAGCATT TTACGCGAAA TCATACCTGT GATTTCGACC
ATCCTTGCCA AACCAGTAAT ACTACCCGAT GACAATTTTT TTGATTTGGG TGGTGACTCC
CTAACGGCAA TGAAGATCAA GATTGAATTG GAAGCTAAAT TATCGCACCC CATTTCACTT
GAGAACATTA TGCTGACTGA CACCATTGGT GAATTAGCCC AATGCATATC TTAG
|
|---|
| Protein sequence | MTLGTIDLGE QLRVHKRVKD SPNGNKTIWD AFETLDSNHS SEVERVEEEI ILPDGLTASF
NDLTAIAAML GSLLSPEACI NVGLFADGLA TCVEVDANDL CHSHNVKAYL AEQRLSKELP
RRDVTARVDI EVTDGTINPP ITSLVWFLAQ NGRFLLSVRQ DRIDLSARMQ LRKLIAFACA
RVLDPRAIPT YDAMPTRRHD KCHQSKPLVE LVFKHKQLRP TALAIIDNTS SQTLTYAELW
HASSVILQQI SEQVNLSRKH PRIALFMERS WQHLASIIAI QRMGGTCVLI DPVHPDYRIN
SYIEECAPDA ILAAASTTAR ADNLSGYTVI NIGKKYLQLS QLDRKYADWV KTTEQDCFIA
ETSGSTGRPK AARLSYTGMV ATIGTIIDYT ALNERSRGSW LSSPGYGMVE VDPLPVLGAG
GTVCIPSSEV VKDARLLAQW FKKHNVTHTL VMTSIAETLW ANEQQLALNT MLIAGERCKQ
WPPTSLNYRV LNVYGSAEAA VVSIEDLSAT RRTLLPSTGR AVPGVNLYIV DEHGQELPAN
CIGELIITGS TLSIGYLNDQ DTVKNFHSNK LDSSSALQYT SGDRARMRLD GTLDIFGRSD
AVVKIRGNRV DLAEVDITAL EVEGVIKAAT TSITDDTGTT LVLFVEQAPG AACVVEAVRQ
HLGDRLQPAA QPSQIVSGIL PLGSNGKVDY SALRSVKIKR DANQLVFYPS TKVETAVRDC
WLTWTRSDEA ILTSSFFQSG GDSLRAMRLV GELACKHGIN IEMSAFIGNP VLSNLVQLAN
ASKEAHLPQF DNLAANEQLL PFELNESQQA LWIGRGADFD YGGVGCQGYF EWEVKQLNHK
NFVRAVGLLV ARHPMLRMTI DDTGKQRIGA VDGTQAVKFV DLSELPQSKI NEEIDLIRSQ
MADEEIGTSQ WPLFQFKVSK ISSDLSRIHF CVDMLIADAW SIFQVIIPDL IELYKDDKAQ
LPELKTTFSD YVAYRHKVVK SERYRADKDY WLQKITQLPA APKLPLLEKG ESSLIQKFQR
HHSTLEKDSW DQLKAQAQKR NISPSGVVAL ALCEVLRCWS EERQFTLNFP VSDRMPVSDD
IDLVVGDFTN TLLVPYEPVA NETFEVRGQR LQNSIWQALD HRLFTGVEVL RELSRFRQSG
LTPLMPVVLT SLLGHPGRHD VSLLGREVFG VSQTPQVTLD VQIRESQGTL YFKWDYLSGV
IRPDVIEAMF EAFCEFLQEL SKDPQEWDRT EREFRPQAQI AIRNSVNMTE AAVPQIHLRD
MLLARVKDPG NALALIDANH SYTWAELGNA SAHISQLMKG VSKPNDQFVG IILPKGVLHY
ASVYACLLAG LGYVPIDIDL PPERMRKMLV KAGVRAVITV PGAITPDGLQ KIELTARDFE
VWAKQPMDFE LAPVPQHYVP YVIFTSGSTG EPKGVEIPEI AVVNHVYDVV ERFALDNSSR
HLATAALHFD MSVFDIFGPL LHGGSVVMPE PAAGPDPEAW LRLHHRHQVT FWACVPAIMD
LLCTVAETAN ITRIVDSVKN IVMAGDWIPL SLLPRARALF PSATLYSCGG PTETTNWSVI
HEIHHDEGSI ARSVIYGKPM MNSKYHIVAD DLADRPDWVP GEMLVESDIS LANGYIGQPE
LSQQTFIFHP KTGRRMYRTG DLGRYLPNGE IEILGRVDNQ IKINGLRVEL GEIENVSQKC
SGVSRACAVA LLGSDGRPKQ IALAYIGKAN LEPVIHAALI ASLPTYMVPK VIQQLDELPL
SKNGKVDIRT LREILRNDMK EQKPNNTNSI LREIIPVIST ILAKPVILPD DNFFDLGGDS
LTAMKIKIEL EAKLSHPISL ENIMLTDTIG ELAQCIS
|
|---|
| |