| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0563 |
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| Symbol | |
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| ID | 4016536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 636736 |
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| End bp | 638772 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637954548 |
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| Product | transcriptional regulatory protein-like protein |
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| Protein accession | YP_561576 |
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| Protein GI | 91791925 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTTCG TTTTCGATAA TATTGAAATA AACACCGCGT TAGTCACGAT CACTAGGAAT
AGACAAGCCC TTGAAATCGA ACCTAAGCTA TTTTCACTGC TGGTTTATCT TTGTCAAAAC
CCTAACAGAG CCATTTCTAG GGATGAGTTA ATTAACACGG TTTGGGAAAA TAGGTTTGTT
TCTGAAGCGG CAATCAACAG GGCCATAGGT CAACTCAGAA AACACATAGA AGATGATACT
TCTCACCCCA AATACATCAG AACTGTCAGC AAGGTAGGCT ATAGACTGGA TGCCGTAGTC
CAACACATAC CCCAAGCACA ATTTCAATGG GAGGCAAAAA AACAGCTAAG CAACAATAAA
AGAAACATTT CACCAAAAGC CGTTATTTTT GTTTTCTTTG TGCTCATAAG CATCATATTA
GTGCTATTTA CAGTACCGCA ACTCGATACC CCACAACTAT CAACATCGGT TTCCATCGAC
AACATCAGCC CTATCACCAC AAGCAGTAAC ATCAGCTTTA ATCCTCACTT CGATACCGCT
AACAATGAGC TACTGTATCT ATTTAAGGAA CATTCACGAT CAAGCGCGCA AATAAAAGCC
CTCAATTCGC AGCATAAAAC CCTTGAGCTT TCCCAGGATA ATTATTACTA CACGGATGTG
GTGTCATTCG ATGATACTCG GGTGATCGCC AGTAGACTGA CAGATCTGAA GCAACGGGAT
TGTGAAATTG TCACTATTAA TAAAATCACC CATGAGACGC AAAAAATAAC TGACTGCGGA
AAATCAATTA TCAACGATCT CCTATTCGAT AAAGTCAGCA ATATGCTTTA CTATCGATTT
CGCAAGAACG TCAGTCACCC CTATGCTATT TACGCCATTT CACTGGCAAG CTTTCGCATT
CATCAGCTTT CAAGGCCCGT ATCAACCGGT AATGGCCTAG GTCACACGGT TTTTACCTTA
TCGCCTAATA AGCAACAGTT AGCCATGATC GAGTACCAAA GCACCGCCGA GGATGAATTA
CAAGTATTTG ATTTACAATC ACAACAGATA ATTCAGCGAC ACAGTGTCCC AAAGGATATC
CATTCCGTGT TGTATCGTTC TCCAACATCC TTGCTGATGG TTAACTCTGA GGGGATGCAC
AGCCTAGACT TGGTAAACGC CCAAATAACC TCGGTTGAGC ATACGGCTGA ATTTGGCAGG
TTTTCCTACA AAGGCGACAA TGAAATTGTA TTTGAAAAAT ACTATTTTCA ATCGAATCTG
GTACAAATTC CATTAGATAC CACAGAATCA ACTAATTTAA CCAAGCTTAT GGGGGTCAAT
GGTAACGCCT CCATAGCTCA CCACTCGGAC ACGATTATTT TCTATGCCAT CACACCCCAG
TCAACCGCGA TAAAACTGCG TCAACCGGAT GGAGAAATAC TCGATAGTCA ATTCCCAGAA
ACGGCTAGGC ATGTTGCCAA TTTTGATTGG TTTGATGATG ATAGCCAGCT AGTGGCCTCG
GTTAATAGTC AGCTTTATCT ATTGAACTTA AAAAACCTAA AATGGCGTAG GTTACCACTT
GATTTTAAGA CAATTCATCA TGTCAGTGTT ATCGATGGGG AAAATGTGCT TTTCAGCGCA
GAAAAAAATG GTGATTGGAA TCTTTGGTCA TTGGATCTTG CAACCAATGC CCTCACCTTA
ATGACCAATA CCGAAGCCTA TAGCGGTCAA GTGTACAAAA ATACGCTGTA TTACACTAAA
TTCAGCACCC CAGGGCTTTT CTATAAAGAT ATCACCACGG ATAACGAGCA ATCGTTGATC
CCAGACCTGC CCGTTACCGA GTGGACCAAT TGGCAGATAA TTGAAGATAC CTTGATATAT
CGGCAAGATC ATCATCTTAT GCAATATGAC CTTAACAGTA AGAAAACCCT CCTATTATTC
GACTTGAACA ATAAGCCAAT CAGAGCCTGT AGAGTAAACC ATAAGATAAG CAAGCTGATA
TGTGAATTAC AACAGCATTC GGTCAGTAAT ATATGGCAGG CGGATATTCG CGATTGA
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| Protein sequence | MIFVFDNIEI NTALVTITRN RQALEIEPKL FSLLVYLCQN PNRAISRDEL INTVWENRFV
SEAAINRAIG QLRKHIEDDT SHPKYIRTVS KVGYRLDAVV QHIPQAQFQW EAKKQLSNNK
RNISPKAVIF VFFVLISIIL VLFTVPQLDT PQLSTSVSID NISPITTSSN ISFNPHFDTA
NNELLYLFKE HSRSSAQIKA LNSQHKTLEL SQDNYYYTDV VSFDDTRVIA SRLTDLKQRD
CEIVTINKIT HETQKITDCG KSIINDLLFD KVSNMLYYRF RKNVSHPYAI YAISLASFRI
HQLSRPVSTG NGLGHTVFTL SPNKQQLAMI EYQSTAEDEL QVFDLQSQQI IQRHSVPKDI
HSVLYRSPTS LLMVNSEGMH SLDLVNAQIT SVEHTAEFGR FSYKGDNEIV FEKYYFQSNL
VQIPLDTTES TNLTKLMGVN GNASIAHHSD TIIFYAITPQ STAIKLRQPD GEILDSQFPE
TARHVANFDW FDDDSQLVAS VNSQLYLLNL KNLKWRRLPL DFKTIHHVSV IDGENVLFSA
EKNGDWNLWS LDLATNALTL MTNTEAYSGQ VYKNTLYYTK FSTPGLFYKD ITTDNEQSLI
PDLPVTEWTN WQIIEDTLIY RQDHHLMQYD LNSKKTLLLF DLNNKPIRAC RVNHKISKLI
CELQQHSVSN IWQADIRD
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