| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0538 |
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| Symbol | |
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| ID | 4016872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 609025 |
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| End bp | 612726 |
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| Gene Length | 3702 bp |
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| Protein Length | 1233 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954524 |
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| Product | ATP-binding region, ATPase-like protein |
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| Protein accession | YP_561553 |
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| Protein GI | 91791902 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCGA CTGAGCCAGA CTTACAATTA AAATCCCCTA TTCAGCGAAA TTATAACCGC
GCCGTTTTCT ATACCTATAT TGGTGTGATT GTCATGGCCT TGTTGTCGGC ATGGGTGTTA
TTCGATAGGC AAAAAGTACA ACTTATCGAA CAGCGGGAAG AGCAAGTGGC ACGTCACGTG
TTGCAAATTG ACTTGTTGCT GGAGTCGAGC ATTCGTGCGG TGAAGAGCCT GCGCAATGTT
GCGGTGGATC ACCTAAGACT CGGCGAGCTG GCGCGCAAGG ACATGTTGCC CGAGTATGAA
AAATTTAATC AAGATGGACA ATTTTTTACC TTAGAACCTA GTTATGCCAA CGGCGGCGAA
CCTTTTACTA ATATGGGCCG CATTACAGGT TCAGGTTCAC TTAAAAACCG CAGCGATAAG
TTTTATCAAG AGCTGGAAAT GCTGTTTGAA TTGTCGCTGT CATTCCCAGT GGCTAAAGAA
GCCGCCCCCA AGGCCTCCTC GATTTATTAC ATCTCCAATC AAAGGATTAT GTCATCCTAC
CCTTGGTCTG CCAATGAGCA AGGCTTTCGG GAAGAGTTGC TCAACAAAAA CCAATTTAGG
CTGGCAACCC CTGAGATGAA TCCTCAGCGC AGTGTATTCT GGAGCCAAGC TTATGTGGAC
GTGTCTGAGC AGGGCTTGCT CACCACCTTA GGCCTACCGG TTTACCTTGA GAATGAATTT
ATCGGCTCCA TCAATTTAGA CATGACCTTG TCGTCACTGG CTAAGCAAAT ACGCATGTAT
TTTAAGATGC CAGGCACAGT TATCTTGCTG GATCAGCAAA ACAATATCTT GTCCCATAGC
GATTTCGATA GCACTGAGAT GAACCGTGTC TATCACATCA GTCAGCGTAT TCCTTCCGAA
TTACATTCGT TGGCCGAGTC GGAAATATTC GACGCCCATG AAGGCGTTCT GCGTAATGGC
TATTACATTC ACTCTGTGGC TTTGCATAAC GCCCCTTGGC GACTGCTTTA TTTACAAGAA
GAAAGCGCGC TGTTTCAAGA TGCTTGGGAC AAATTACAGT TAACCTTCTT GCTGGTGGTG
TTGGCCCTCT CTGTGCTGGT GACTATAGTC CATTGGCAGA CGCGCCGCGC CTTCGTAAGC
CCTGCATCAA GGCTGCTGAC TCACCTTGAA GTGTGCTCGC AATCGCCGAT TAAGCCGCCC
CATAAAATCA CCTCAGGCTG GGAGCCTTGG TTTCAGTTGG TGAGCCGCAT TTTCGAAGAA
AACAAACAAT ACACCTTGCA TTTGGCCGAG CAAAATAAGC GCTTGGATAA CTTAGTGGCC
AAACGCACCC AAAGGTTGAG AGAAACCACT GAAAGGCGAG AGCGCGAATA TGCCTTGCTG
CGCTCCTTGA TTGACTCTAT TCCAGAGGCG ATTGTCTTTA AAGATCAAGA AGGTAAGTAC
TTAGGTTGTA ATAAATCTGC CGAGCACATG CTGGGTTACA GCGAAAGCGA AATGATCGGC
ATGACCTCGG TTGAGCTGAC AAGCCCTGAG CAAGGGGCGC GGATCCGCTT AGAAGACAGT
CAAGTACTCA AAGACAGGGC CGCATTGCGT TACCAAGAAA AGGTGGATAT TTCAGGCAAA
TCTGTGCTGC TGGACATCTT AAAATTACCT TTCTACAATC GCCGCGGCGA GCTATTGGGG
CTAATTTCTG TCTGGCGCGA TGTCACCCGC GAGTACCAAT CGGCGGAGCA GCTTCGGCTG
TCAGAAGAGC GCTATCACTT GGCCATGGAT GCAGTAGAAG ATGGCCTGTG GGATTGGTAT
TTAGACTCAG AGCAAATCAT CTGTAACCCG TCTTATTATT CTATGCTGGG CTATGAGACC
AATGAATTTC CGGCGTTAAT TTCATCCATC GAAGAGCTTA TCCACCCCGA TGATAGGGAC
AGGGTAAAAA CCTACCGCGA TCTCTACCTA AGTGAACCCA GCGGCGCCTA CGAAACAGAA
TTTAGAATGC GCACTAAGTC AGGGCGTTAT TTGTGGGTGC TCTCCCGTGG CCGAGTGGTA
GAGTTTACCG CCGATGGCAT GCCGAGCCGT ATGCTGGGTA CCCATAAGGA TATTACCCGT
CAAAAGAGCA ATGAAGTGGC GCTGCTGGAA GCTAAGCACG ACGCCGAATT GGCCAACATG
TATAAGAGTG AATTCTTGGC CAACATGAGT CATGAAATTC GCACCCCGAT GAATGCCATT
ATCGGCATGT TGCAGCTGGC ATCTCGTACT CAGTTGACCC TGCAGCAGCA AGATTACCTT
AATAAAGCGG GCTTCTCTGC CGAGTCATTA TTAAGAATTA TCAACGATAT TCTCGATTTC
TCTAAAATCG AAGCCGGCAA GCTTGAGCTT GAAAGTGTGC CATTCTCCTT GGAGAAAGTG
CTGGATCATG TGATTGACAT GAATGCCTTA AGCGCCCAAG AGAAAGGCGT CGAGTTATTG
CTGTTCTCAC CACTAACCAC AGGCTTAACC TTAAAAGGCG ATCCGCTGCG GTTAGGGCAA
GTGTTAGTCA ACTTGTTGTC TAACGCGGTG AAGTTCACTC AAGACGGTGA GATTGAGCTG
GGTTGTGAAG ACGTGGGCGA ACGCGATACC CAAATCAGCC TTAAGTTTTG GGTGCGCGAT
ACCGGTATAG GCATCAGCCG TGAACAACAA GCGAATCTAT TTGATGCCTT CTCACAGGCT
GACGGCTCAA CCACCCGTCA ATATGGCGGC ACAGGGTTAG GCTTGTCCAT CAGTAAACAT
TTAGTGTCCA TGATGGGCGG TAACTTAAGT GTTGAATCAG AGCCGCAGCA GGGCAGCACC
TTTAGTTTCA CTCTCAGCTT TGACATAGCC AAAGAACTGC CGCAACAGCC GTTAGTCGTG
CCTAAGCAGT TAAATAACTT GACTAGTTTA GTGGTGGATG ACAATCCGAG CGCGCTGCAA
ATTTACTCTA CTTTATTGCG TGACTTCAGC TTTGGGGTGA ATACTGCCAC CGGCGGCGCA
GAAGCAATCG AGCGCTTATT ACAGCAAGAC ATAGACTTAC TCTTACTAGA CTGGATGATG
CCAGTGGTGA GTGGCGGCAT GGTGATTAAA GCCGTGGATG AAATGATTGC CGATGGTCGC
CTTAAGAAAC GTCCGGTTAT CATCATAATG ACGGCCTATT CCACAGAGCC ATTGAATCTA
GAATTAGATA AATACGAATA TCAAGCCGTG CTGCAAAAGC CCTTTAAAGC CTCATCCTTA
TTCGATGAAA TTATTGGTGC ATTCGCAGCG CCGGCCAAAA TTAAGCAAGA AATTGCCGAA
CAAGTCGAAC CACAGCCGCT GCAATCAGGG TTGATTTTGT TGGTCGAGGA TAACTTTATT
AACCAACAAG TGGCCAGCGA GTTACTCAAG AGCGCAGGCT ATGATGTAGT GATCGCCGAC
AATGGTCAAA TCGCCTTAGA TTTGGTGGCA AAACAAGAAT TTGATGCAGT GCTGATGGAC
ATTCAAATGC CAGTGATGGA TGGCTTAACC GCGGCCAAAA TCTTAAGAGA AACCTACAGC
ACGCAGCAAT TACCTATTAT CGCTATGACA GCGCACGCCA TGTCAGGGGA TAAAGAAAAG
AGTTTGAACG CCGGCATGAA CGCCCATATC ACTAAGCCAA TCGTGTTGAC TGAATTGTTT
GAGACGCTGG CCTATTGGAT AGCCTTAAAA AACCAAGGCT AA
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| Protein sequence | MKSTEPDLQL KSPIQRNYNR AVFYTYIGVI VMALLSAWVL FDRQKVQLIE QREEQVARHV
LQIDLLLESS IRAVKSLRNV AVDHLRLGEL ARKDMLPEYE KFNQDGQFFT LEPSYANGGE
PFTNMGRITG SGSLKNRSDK FYQELEMLFE LSLSFPVAKE AAPKASSIYY ISNQRIMSSY
PWSANEQGFR EELLNKNQFR LATPEMNPQR SVFWSQAYVD VSEQGLLTTL GLPVYLENEF
IGSINLDMTL SSLAKQIRMY FKMPGTVILL DQQNNILSHS DFDSTEMNRV YHISQRIPSE
LHSLAESEIF DAHEGVLRNG YYIHSVALHN APWRLLYLQE ESALFQDAWD KLQLTFLLVV
LALSVLVTIV HWQTRRAFVS PASRLLTHLE VCSQSPIKPP HKITSGWEPW FQLVSRIFEE
NKQYTLHLAE QNKRLDNLVA KRTQRLRETT ERREREYALL RSLIDSIPEA IVFKDQEGKY
LGCNKSAEHM LGYSESEMIG MTSVELTSPE QGARIRLEDS QVLKDRAALR YQEKVDISGK
SVLLDILKLP FYNRRGELLG LISVWRDVTR EYQSAEQLRL SEERYHLAMD AVEDGLWDWY
LDSEQIICNP SYYSMLGYET NEFPALISSI EELIHPDDRD RVKTYRDLYL SEPSGAYETE
FRMRTKSGRY LWVLSRGRVV EFTADGMPSR MLGTHKDITR QKSNEVALLE AKHDAELANM
YKSEFLANMS HEIRTPMNAI IGMLQLASRT QLTLQQQDYL NKAGFSAESL LRIINDILDF
SKIEAGKLEL ESVPFSLEKV LDHVIDMNAL SAQEKGVELL LFSPLTTGLT LKGDPLRLGQ
VLVNLLSNAV KFTQDGEIEL GCEDVGERDT QISLKFWVRD TGIGISREQQ ANLFDAFSQA
DGSTTRQYGG TGLGLSISKH LVSMMGGNLS VESEPQQGST FSFTLSFDIA KELPQQPLVV
PKQLNNLTSL VVDDNPSALQ IYSTLLRDFS FGVNTATGGA EAIERLLQQD IDLLLLDWMM
PVVSGGMVIK AVDEMIADGR LKKRPVIIIM TAYSTEPLNL ELDKYEYQAV LQKPFKASSL
FDEIIGAFAA PAKIKQEIAE QVEPQPLQSG LILLVEDNFI NQQVASELLK SAGYDVVIAD
NGQIALDLVA KQEFDAVLMD IQMPVMDGLT AAKILRETYS TQQLPIIAMT AHAMSGDKEK
SLNAGMNAHI TKPIVLTELF ETLAYWIALK NQG
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