| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0532 |
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| Symbol | |
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| ID | 4016866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 599795 |
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| End bp | 600760 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637954518 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561547 |
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| Protein GI | 91791896 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAGAATG ATCAAAGCGC AATGAATGAA CTACACTGGC TAATCGATAT GGTGCAAACC
ATAGATGTTG GCTTAGTAGT GTTAGATCGA AATAATGACA TCCAGCTATG GAATGGTTTT
ATGGAGAACC ACAGCGGGGT TTCACCCAAT TCCATTAAGG GTAAAAACCT ATTTGAAACC
TTCCCAAAGT TGCCCGCCGA CTGGCTAAAA CAGAAGATGC AATCTGTGTA CTTGCTGAAA
AACCGCACCT TTATCAGCTG GGAACAAAGG CCTTATGTCT TTGAATTTAA AAATTACCGC
CCTATTACCG GGCGCGCAGA TTTTATGTAT CAAAACATAA CCTTACTACC TCTAGCATCC
CTAACGGGTA TACATCATAT TTGTATCATA GTGTACGATG TGACCGATAT TGCGGTTAAT
AAATTGCAAT TAAAAGGCGC CAATGAACAG CTTGAGTTAT TAAGCCAGAC TGACGGTTTA
ACTCAATTGC ACAACCGCCG TCATTGGCAA GAGTGTATGG AGCATGAGTT TGAGCGCTTC
AACCGCTATG CCGATATCGC AAGCTTAGTG ATGATAGATA TTGATAATTT CAAACAAATT
AACGATAAAT ATGGTCATCC CGCTGGGGAT AAAGTCATCC AGCACATAGC GCATTTACTG
AAGAATGCCC TAAGGGAAAC TGACTGCGCT GGACGCTACG GCGGTGAAGA ATTTTCTGCA
GTGCTTGCTA AAACCAATGC CACCGATGCG CTGCAATTTA CCGAGCGACT GCGCACACAA
ATTGAAGCAT CTGAAGTGAG TTATAAAGAT CAAAAAATTA AGGTCACGGT AAGCCTTGGG
ATTAATGCCT TGCATTCAGG AATGGGCAGT AGCTCAAGCT GGCTATCAGG CGCCGATAAG
GCCCTCTACC AAGCGAAACA AATGGGCCGA AACAAGAGTG TTATTTATAC CGATGAGCAA
GAATAG
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| Protein sequence | MENDQSAMNE LHWLIDMVQT IDVGLVVLDR NNDIQLWNGF MENHSGVSPN SIKGKNLFET
FPKLPADWLK QKMQSVYLLK NRTFISWEQR PYVFEFKNYR PITGRADFMY QNITLLPLAS
LTGIHHICII VYDVTDIAVN KLQLKGANEQ LELLSQTDGL TQLHNRRHWQ ECMEHEFERF
NRYADIASLV MIDIDNFKQI NDKYGHPAGD KVIQHIAHLL KNALRETDCA GRYGGEEFSA
VLAKTNATDA LQFTERLRTQ IEASEVSYKD QKIKVTVSLG INALHSGMGS SSSWLSGADK
ALYQAKQMGR NKSVIYTDEQ E
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