| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0511 |
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| Symbol | |
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| ID | 4017110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 579199 |
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| End bp | 581652 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954497 |
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| Product | ribonuclease R |
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| Protein accession | YP_561526 |
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| Protein GI | 91791875 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAACG ATCCTCATTT TGAGAGAGAG CAAGACAAGT ACGACAACCC CATTCCAAGC
CGTGAGTTCA TTTTAGAATA CTTGCGCGCC CAAAAGTCAC CTATTACTCG CGATAACATT
GCCAAGGCAT TAAATATCCA TGATGAAGAG CCCTTAGAAG CCCTTCGTCG TCGCCTGCGC
GCCATGGAGC GTGATGGTCA GTTAGTCTTT ACTCGCGGTC AAAGTTACGG CTTGCCAGAG
CGTATGGACT TATTGTCAGG CACAGTGCTT GGGCATAGAG ATGGCTTTGG ATTTTTTAAG
CCTGATGAAG GCGGTGATGA TCTATTTATC AATAACCGTG ACATGCTGAT GTATTTTCAT
GGCGATAAAG TGCTAGCGCA GAAAGCGGGT ACAGATAGGC GCGGTCGCCG TGAAGCTCGC
ATTGTACGTT TGGTGCAACC ACGCACAGCG GCCTTAGTCG GCCGTTATCA CGTGGATGCA
GGCATGGGCT TTGTCATCGC CGATGATAGG CGTATCACCC AAGAAATCTT AATTGCCAGT
GAAGACACTC ATGGCGCAAG AGCGGGTGAC GTGGTTGTGG TTGAACTCAC CCGTCGTCCC
GGCCGGTTTG TTAAAGCGGC AGCGAAAGTG ACCGAAGTGC TGGGTAAAAC CTTGGCGCCA
GGGATGGAAA TTGAAATTGC CTTGCGCAAT TATGATTTAC CTCATACTTG GTCTGCGGTT
ATTGAGAAAA AACTTAAGCG TATTCCTGAT GAAGTGACCG AAGAAGATAA ATTAGACCGA
GTCGATCTAC GCCATTTACC CTTGGTCACC ATAGATGGTG AAGATGCACG GGATTTCGAT
GATGCCGTGT ACGCTGAGAA AAAACCAAGC GGCGGCTGGC GTTTATGGGT TGCGATTGCC
GATGTGAGCC ATTATGTGCG CACAGATTCT GCCTTAGATG AAGAGGCTCG TGCACGTGGC
AACTCAGTGT ATTTCCCGTC GCAAGTGATC CCTATGCTGC CAGAAAAGAT ATCCAATGGC
CTCTGTTCGC TGATGCCTCA TGTGGATCGC TTGTGCATGG TAGCGGAAAT GACTATCGCC
GCTAGCGGCA AGTTATCGGG CACTAAATTT TATCCGGCTG TGATGCACTC TCATGCGCGC
TTTACTTACA CCCAAGTGGC TGACATGTTA GAAGGCGGGG CTATTGCCCC CGAGCATGCC
GCCTTGTTCC CGCATTTGCA GTGTTTACAG TCTTTGTATT TGACCTTAGA TGAACGCCGC
GCCGAACGTG GTGCCATCGC CTTTGAAACC TTAGAGACTC AGTTTATCTT CAATGAGCAA
CGCAAGATTG AAAAAATTGT GCCTCGCGGT CGTAATCAGG CCCATAAGAT CATCGAAGAG
TGCATGATTT TAGCCAACGT TGCCTCGGCA AACTTTGTTA AAAAACACAA AGGTGAGGTG
TTATACCGGG TCCATGAAGC ACCTTCTGAG CAGAAACTGG CAAACTTTAA AGAGTTTCTG
GCAGAACGTG GAATAAGCAT GGACGGTGGG CTTGAACCCA CACCATCTGA TTACCAAAAT
TTAATGCTAA AGATCGCCGA TAGGCCCGAT GCTGAATTGA TTCAGGTCAT GTTGTTGCGT
TCTATGCGTC AAGCGGTTTA CAGCCCAGAC AATGAAGGTC ACTTTGGCCT CGCGTTGGAA
GCCTATTCGC ACTTTACTTC GCCTATTCGT CGCTATCCCG ATCTCGTGTT GCACAGGGTT
ATCAAATACC TGTTGGCCAA AGAAGCAGGT GAAACCAAAG ATAAATGGAC TCAGAATGGT
GGTTACCACT ACCTGACTGA AGAGCTGGAT GCCCTTGGTG AAGAATGTTC AACCACTGAG
CGACGTGCCG ATGAAGCGAC CCGAGATGTG AGCGATTGGC TTAAGTGTGA ATACATGCAA
GATCATGTGG GCGACAGCTT CGAAGCCGTG ATTGCCTCTG TGACTAACTT TGGTTTATTT
GTGCGCTTAA ATGAGCTGTT TATCGATGGT TTAGTGCATA TTTCAAGCCT TGCTAGTGAT
TACTATCAGT TCGATGGTAC TCGACAGCGT TTAATTGGTG AAAATACCCG TAAAATTTAC
CAAGTGGGTG ATGCGGTTTC TGTGAAGGTG GCTGCGGTAA ACCTAGATGA CAGGCAAATC
GATTTGGTGA TGATTGGCGA TAATGTCAAA GGTCGAGCCA AATCTGGCGC TTCAGGGAGC
CGTAAACCAT TAACCGCCAG AGAAAGAACT AATCTGGAAG GCGCAAAAAC TGATAAAAAA
TCATCGACTA AAGCAGCAGC GAAGTCCGAT GCTAAGCCGC GCAGGAAAAG AAAACCGGCA
AAATCAGCGG CAGAGTCTGG CAGTAAAAGC ACGCAGAAAA AGCCTGCGAC TAAGAAGCCT
GCCGCTAATA AGTCGGCGCC TAAAAAAACA GTTAAAAAGA AACCCAAGCA GTAA
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| Protein sequence | MINDPHFERE QDKYDNPIPS REFILEYLRA QKSPITRDNI AKALNIHDEE PLEALRRRLR
AMERDGQLVF TRGQSYGLPE RMDLLSGTVL GHRDGFGFFK PDEGGDDLFI NNRDMLMYFH
GDKVLAQKAG TDRRGRREAR IVRLVQPRTA ALVGRYHVDA GMGFVIADDR RITQEILIAS
EDTHGARAGD VVVVELTRRP GRFVKAAAKV TEVLGKTLAP GMEIEIALRN YDLPHTWSAV
IEKKLKRIPD EVTEEDKLDR VDLRHLPLVT IDGEDARDFD DAVYAEKKPS GGWRLWVAIA
DVSHYVRTDS ALDEEARARG NSVYFPSQVI PMLPEKISNG LCSLMPHVDR LCMVAEMTIA
ASGKLSGTKF YPAVMHSHAR FTYTQVADML EGGAIAPEHA ALFPHLQCLQ SLYLTLDERR
AERGAIAFET LETQFIFNEQ RKIEKIVPRG RNQAHKIIEE CMILANVASA NFVKKHKGEV
LYRVHEAPSE QKLANFKEFL AERGISMDGG LEPTPSDYQN LMLKIADRPD AELIQVMLLR
SMRQAVYSPD NEGHFGLALE AYSHFTSPIR RYPDLVLHRV IKYLLAKEAG ETKDKWTQNG
GYHYLTEELD ALGEECSTTE RRADEATRDV SDWLKCEYMQ DHVGDSFEAV IASVTNFGLF
VRLNELFIDG LVHISSLASD YYQFDGTRQR LIGENTRKIY QVGDAVSVKV AAVNLDDRQI
DLVMIGDNVK GRAKSGASGS RKPLTARERT NLEGAKTDKK SSTKAAAKSD AKPRRKRKPA
KSAAESGSKS TQKKPATKKP AANKSAPKKT VKKKPKQ
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