| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0503 |
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| Symbol | |
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| ID | 4017102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 571655 |
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| End bp | 572731 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637954489 |
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| Product | peptidase S1C, DegS |
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| Protein accession | YP_561518 |
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| Protein GI | 91791867 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0125396 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATAA AAGCGCTCCT TCTGTATTTA ACTAAAGCCG TATTGTTCGG TCTAGTCATG
GCCGCCGTTT TCTTAGGTGC CACTAGCATC ATCAATGGCG ACGGTTTTGG CAGTAACCTT
ACGGGCAATA ATCACAGCAG TAAAACACTC TCCTTTGCTG CGGCAGTGCG TAAAGCCGCC
CCTGCCGTGG TCAATATCTA CAGTTTGAGC ATAGCCGAAG ACCAACCGCT AAATTCAGGT
TCACTCCAAG GTCTTGGCTC TGGCGTTATA ATGAGTAAAG AGGGTTATAT CCTCACCAAT
TATCATGTGA TAAAAAAAGC CGATGAAATT GTGGTCGCGC TGCAAGATGG CCGCAAATAC
ACTTCAGAAG TCGTAGGCTC AGATCCAGAA ACAGATTTAA CCGTGTTAAA AATTGATGGC
GATAACTTGC CCGTAGTCCC ACTTAATCTG TTAACTCCGG TGCAAGTGGG CGATGTGGTA
CTCGCCATAG GTAACCCTTA CAACATAGGC CAGACCATCA CCCAAGGGAT CATCAGTGCC
ACGGGCCGTA ACGGATTGAG CTCAGGGTAT CTCGATTTCT TACAGACAGA TGCCGCCATC
AATGCCGGAA ATTCAGGTGG TGCACTGATA GACACAGATG GTGAATTAGT GGGCATTAAC
ACAGCGGCAT TTCAGGTCGG CGGTGAGGCC AGCGGCAATG GGATTAGTTT CGCCATTCCA
ATAAAACTGG CCCATAGCAT CATGGGCAAA TTGATCAAAA ATGGCCGAGT GATCCGCGGA
GCCATTGGCG TTTCCGGTGA AGCCTTAAGT CCAGTATTGG CGCAAATTTT AAACCTGCCG
AACCAAAAAG GGGTTGTAGT TACCGGCGTC GATCCCACAG GTCCTGCCGC ACGAGCTCAA
CTTAGGGCTA GAGATGTCAT CATTGCCTAC GAGAATGAAG AAGTGCCAGG GGTTGAAATG
CTAATGGATA GAATTGCCGA AACGCCTCCC GATTCCAGAG TGACCTTGAC CATTATTCGT
GAAGGCAAAG TTCAGGCCTT GCCTGTGGTT ATTGCTGAGA AGCCCTTGCC TGAATAA
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| Protein sequence | MNIKALLLYL TKAVLFGLVM AAVFLGATSI INGDGFGSNL TGNNHSSKTL SFAAAVRKAA
PAVVNIYSLS IAEDQPLNSG SLQGLGSGVI MSKEGYILTN YHVIKKADEI VVALQDGRKY
TSEVVGSDPE TDLTVLKIDG DNLPVVPLNL LTPVQVGDVV LAIGNPYNIG QTITQGIISA
TGRNGLSSGY LDFLQTDAAI NAGNSGGALI DTDGELVGIN TAAFQVGGEA SGNGISFAIP
IKLAHSIMGK LIKNGRVIRG AIGVSGEALS PVLAQILNLP NQKGVVVTGV DPTGPAARAQ
LRARDVIIAY ENEEVPGVEM LMDRIAETPP DSRVTLTIIR EGKVQALPVV IAEKPLPE
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