Gene Sden_0487 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0487 
Symbol 
ID4017777 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp559927 
End bp560370 
Gene Length444 bp 
Protein Length147 aa 
Translation table11 
GC content46% 
IMG OID637954473 
ProductPTS IIA-like nitrogen-regulatory protein PtsN 
Protein accessionYP_561502 
Protein GI91791851 
COG category[G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 
TIGRFAM ID[TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.393864 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACTTT GTAGCATACT GCAGCCGGAA TGCACCACCT GTGCCACACC GGGCAGTAAG 
AAAAAGGTAC TGGAACTCAT CAGCGAACTT GTCGCTGCCC AGTACCCACC CCTCTCTGCG
CAAGCAGTTT TCGAAAGCCT AGTGGCCAGA GAAAAAATGG GCAGCACAGG AATTGGGAAT
GGCATTGCGA TACCACATGG CCGTTTAGAC AATATCACTC AACCAATAGG CGTATTTATC
AAATGCGATG AAGCCATAGC ATTCGATGCT ATCGATAAGC AACCTGTTGA TCTACTATTT
GCCTTATTGG TACCCGAGGA TCAATGTAAG CAGCATTTAA GCACCTTAGC GGCCATGGCT
GAAAAACTAT CGGACAAACA CATTTTAAAA CAGCTGCGTA AAACCCAAGA TGCAGCCGAA
CTTTACCAGG TAATAACTCA ATGA
 
Protein sequence
MELCSILQPE CTTCATPGSK KKVLELISEL VAAQYPPLSA QAVFESLVAR EKMGSTGIGN 
GIAIPHGRLD NITQPIGVFI KCDEAIAFDA IDKQPVDLLF ALLVPEDQCK QHLSTLAAMA
EKLSDKHILK QLRKTQDAAE LYQVITQ