Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0484 |
Symbol | uvrD |
ID | 4017774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 556553 |
End bp | 558721 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637954470 |
Product | DNA-dependent helicase II |
Protein accession | YP_561499 |
Protein GI | 91791848 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0210] Superfamily I DNA and RNA helicases |
TIGRFAM ID | [TIGR01075] DNA helicase II |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGTAT CAAGATTACT AGACGGCTTA AATGATGAAC AGCGTGAAGC CGTAGGCGCA CCACTATCGA ACATGTTAGT GCTCGCTGGC GCAGGCAGTG GTAAAACCCG TGTATTAACC CATAGAATTG CTTGGTTAAT GCAGGTTGAA CAGCAAAGCC CCTACTCCAT CTTAGCCGTG ACCTTCACCA ATAAAGCCGC TGCAGAAATG CGCGAGCGCG TTGAAAAAGT GGCAGGCTCT AACATGGGCC GCATGTGGAT AGGTACCTTC CATGGCCTAG CCCATCGTCT ACTGCGGACC CATTTCCAAG ATGCTAACCT GCCCCAAAGC TTTCAAATAA TCGACTCTGA CGATCAGCTT CGCTTACTTA AGCGCATTTT AAAAAGCCTA AACCTCGACG AAAAACAATA TCCACCCCGT CAAGCCCAAG GCTATATCAA TGGCAAGAAA GACCAAGGAC TGCGCCCTAA GCATATCGAT GCTGGCGGTT TCCCCATTGA ACAAAACCTG CTAAATATCT ATAAAGTTTA CCAAGAGTCT TGCGATCGCG CGGGCTTAGT AGACTTTGCT GAAATCCTCT TGCGTGCCCA CGAGCTGTGG CTCAATAAAC CCCATTTACT GGCGCACTAC CAAGAACGCT TCAAACACAT CTTAGTGGAC GAGTTCCAAG ACACTAACGC CATTCAGTAT GCGTGGATCC GTGTATTGGC AGGTAACAGT GCTAATGTGA TGATAGTGGG TGATGACGAT CAGTCCATCT ACGGCTGGCG TGGCGCTCAG GTTGAAAATC TACACAAGTT CCTACAAGAC TTTCCAGGTT CTAGCACCAT ACGCTTGGAA CAAAATTACC GTTCTAGCGC CAATATTCTG AATGCATCCA ACGAATTAAT TGCCAATAAC CCAGACAGGT TAGGCAAAAA GTTGTGGACC GAAGATAAAG ACGGCGAACC CATTTCCATT TATTGTGCCT TTAATGAAAT GGACGAGGCC CGTTATATCG TTAGCCGTAT CCAAGACTGG CAAGAAAAAG GCGGCGCCTT AACTGATTGT GCTATTCTCT ACCGTTCAAA TGCCCAATCT CGGGTATTGG AAGAAGCTTT CTTACACAAG GGCATGGCTT ACCGTATTTA TGGTGGTCTG CGCTTCTTCG AACGCCAAGA AATCAAAGAC GCCATGGGTT ACATGCGTCT TATCAATAAT CATAATGATG ATGCAGCCTT TGAGCGTATC GTTAACACCC CCACTCGCGG GATTGGTGAT CGCACCTTAG ATATTATGCG CACCACCGCC AGACAACACC AGCTCACCCT ATGGCAAGCG AGTTTACGTT TGTTGGAAGA GAAAGTCTTA GCGGGTCGTG CGGCCAATGC GGTGCGCGGC TTTATGGACT TAATCGTTGA CCTTAAAGTC GACACAGAAG CAATGCAGCT GTTCACTATG GTCGATACTG TAGTGAATAC TTCTGGCCTT AGAAGCATGT ATCAAGCCGA AAAAGGCGAG AAAGCCCAAT CTAGGATCGA GAACTTAAAC GAACTCGTGA CGGCGGCCCG CAGCTTTGAA ATGCCAGAAG AACTTGAAGA CATGGGCGAG CTCAATGCCT TCTTGTCCCA CGCCGCGTTA GAAGCGGGTG AAGGTCAAGC CGATGCTTTC ACTGATGCGG TACAGTTGAT GACACTGCAT TCTGCCAAGG GACTCGAGTT TCCCATGGTG TTTATGGCTG GCGTCGAAGA GGGAATATTC CCCAGTAAAA TGGCGTTGGA TGAAGGCGAT AGACTCGACG AAGAACGTCG CCTTTGTTAT GTGGGCATGA CCCGCGCCAT GGAAAAATTG ACCATTAGTT ACGCCGAATC ACGACGCATT TATGGTCGTG AAGATTACGC AAGTCCATCA CGCTTCATTG GCGAAATTCC CGCTAAATAT GTTGAAGAAA TTCGCCTTCG GGCAAAGGTA ACAACCCCAA CCATGAGTTC TAAAATTAGC AAACCAAGAG CCACCATAGC CCAAGACACA GGCTTTAAAA TAGGTCAAAC GGTTAAGCAC TTTAAATTCG GCCAAGGCGA TATCACCAGC TTTGAAGGCA TGGGGGATAA AGCTAGGGTT CAAGTAAACT TCACCGATGT AGGCAGTAAA TGGCTGCTGG TCACACTTGC CAAGCTTGAG GCCTGTTAA
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Protein sequence | MDVSRLLDGL NDEQREAVGA PLSNMLVLAG AGSGKTRVLT HRIAWLMQVE QQSPYSILAV TFTNKAAAEM RERVEKVAGS NMGRMWIGTF HGLAHRLLRT HFQDANLPQS FQIIDSDDQL RLLKRILKSL NLDEKQYPPR QAQGYINGKK DQGLRPKHID AGGFPIEQNL LNIYKVYQES CDRAGLVDFA EILLRAHELW LNKPHLLAHY QERFKHILVD EFQDTNAIQY AWIRVLAGNS ANVMIVGDDD QSIYGWRGAQ VENLHKFLQD FPGSSTIRLE QNYRSSANIL NASNELIANN PDRLGKKLWT EDKDGEPISI YCAFNEMDEA RYIVSRIQDW QEKGGALTDC AILYRSNAQS RVLEEAFLHK GMAYRIYGGL RFFERQEIKD AMGYMRLINN HNDDAAFERI VNTPTRGIGD RTLDIMRTTA RQHQLTLWQA SLRLLEEKVL AGRAANAVRG FMDLIVDLKV DTEAMQLFTM VDTVVNTSGL RSMYQAEKGE KAQSRIENLN ELVTAARSFE MPEELEDMGE LNAFLSHAAL EAGEGQADAF TDAVQLMTLH SAKGLEFPMV FMAGVEEGIF PSKMALDEGD RLDEERRLCY VGMTRAMEKL TISYAESRRI YGREDYASPS RFIGEIPAKY VEEIRLRAKV TTPTMSSKIS KPRATIAQDT GFKIGQTVKH FKFGQGDITS FEGMGDKARV QVNFTDVGSK WLLVTLAKLE AC
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