| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0476 |
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| Symbol | |
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| ID | 4016659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 547921 |
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| End bp | 549162 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637954462 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_561491 |
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| Protein GI | 91791840 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCAGATT TATTCAGAAA ACAAGTTTTA GAGAAAAACA AAACCACATA CTATGGCAAA
GCTGTAGTTG CGGTACCTGT ACACTACTCT ATTATTTTAT TTTTCCTCTC AATCACAGTT
ATTTCGATAT TAGCTTTCTT ATTTTATAGC GACTATGCAA AAAAAGAAAA GGTGAAGGGC
TACCTTGTCC CAACTAATGG TCTTGCTAGA GTTTATTCCC ATACCAGCGG TGTCGTTAGT
CAAATAGCAG TAAAAGAAGG GGATATTGTA ACTAAAGGTG ATACCTTGCT TTCTGTATCC
AATGATAAGT TCCTACAGAA TTCACTAAGC TCTGATCAAG AAAAAATTAA GCAAATTGAC
AAGCAAATAA ACTTAGTCAA GGGGCAGCTG GCGCAATACG ACAGTTTATT TAAAGAAAGA
GCATTAAGAT TAAATCGTAT CATTCATTTC TTGAAAAAAG AACAAATTGA ACTAGCGCTT
CAAGGCTCTC TGCTGAGAGA CAGAGTCCAA CTTGCCAAAG ACCGTCTCGA TAATATTAAA
ACATTACAAA TAGATAACTT CGCCAGTCAA AGCGAAGTAA AAACTCAGCT TGATCTAGTG
CTAGACTTTC AGCAACGAAC TCAAGAGCAC AATACTATAG TACTAAAATC TGAAACCAAT
CTTGCTAACG CTTTAAATGA TAAAGCAAGG CTCCCCTTTG AAAAGCAGCA GCAAGTGGAT
CAGCTCAACA TTGAACTTTC CAAGCTTGCC AATAATAAAA CAGCTATTTT AGAGAATAAT
AATCTAGTAT TAAAAGCACC AATTACTGGA ACCGTATCCT CGATAAAATT TAATATCGGC
GAGTTTGCCT CATCAGGGGA TTACCTAGTT ATCATAATTC CATCAGACTC TGAATTAGAA
GCTGAAGTGT TTGTTCCCAC CCGTGCCATT GCTTTTATCA AGGAGGGGGA TGAGGTAAAT
ATCAAGCTCG ATGCCTTTCC CTTTCAAAAA TTTGGTGTTA CTCACGGCGA GGTCTCACAT
GTAGCAAAAA ACATTATCTT TTCTGCCGAA ACGACCAGCA AACTCTCATT CAATGAGCCT
GTTTATAAAA TCAAGGTACG ATTAGCGCAG CAATACATTA AAACTTATGG CAACAAAACC
GCATTAATTC CTGGTATGTT GTTGCAAGCG GATATCAATA CCGGTAAGAG AACTCTAATA
GAGTGGCTAC TCGAGCCACT ATTCATTATT AATGGATATT AA
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| Protein sequence | MSDLFRKQVL EKNKTTYYGK AVVAVPVHYS IILFFLSITV ISILAFLFYS DYAKKEKVKG
YLVPTNGLAR VYSHTSGVVS QIAVKEGDIV TKGDTLLSVS NDKFLQNSLS SDQEKIKQID
KQINLVKGQL AQYDSLFKER ALRLNRIIHF LKKEQIELAL QGSLLRDRVQ LAKDRLDNIK
TLQIDNFASQ SEVKTQLDLV LDFQQRTQEH NTIVLKSETN LANALNDKAR LPFEKQQQVD
QLNIELSKLA NNKTAILENN NLVLKAPITG TVSSIKFNIG EFASSGDYLV IIIPSDSELE
AEVFVPTRAI AFIKEGDEVN IKLDAFPFQK FGVTHGEVSH VAKNIIFSAE TTSKLSFNEP
VYKIKVRLAQ QYIKTYGNKT ALIPGMLLQA DINTGKRTLI EWLLEPLFII NGY
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