Gene Sden_0447 details

Gene Information

• Locus tag: Sden_0447
• Symbol: rho
• ID: 4017218
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 517684
• End bp: 518949
• Gene Length: 1266 bp
• Protein Length: 421 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637954433
• Product: transcription termination factor Rho
• Protein accession: YP_561462
• Protein GI: 91791811
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTTAA CTGAATTAAA AGACACCCCT ATTTCTGACT TAGTTTCCTT AGCCGAAACA 
ATGAAATTGG AAAATATGGC CCGTACTCGT AAACAGGACA TTATTTTCTC AATTCTTAAA 
GCCCACGCCA AAAGCGGTGA AGATATTTTT GGTGGCGGTG TACTTGAAAT CCTGCAAGAC 
GGCTTTGGTT TTTTACGCAG TTCCGATGGC TCATACTTGG CAGGTCCTGA TGACATTTAT 
GTCTCACCAA GCCAAATTCG TCGTTTCAAC ATGCGTACCG GCGATAGCAT ATTCGGTAAG 
ATCCGTCCGC CTAAAGAAGG CGAGAGATAT TTCGCGCTGC TTAAAGTTAG CGAAGTCAAT 
TTCGACAAAC CAGAAAGCTC AAAGAATAAA ATCCTGTTTG AAAACTTAAC CCCGTTACAT 
GCAGAAGAAC GTCTGCGTAT GGAACGTGGT AACGGTTCAA CAGAAGACAT TACCGCCCGC 
ATCCTAGATT TATGCTCGCC AATTGGTAAA GGCCAACGTG GTCTTATCGT TGCGCCGCCA 
AAGGCAGGTA AAACCCTATT ACTGCAAAAC ATCGCCCAAA GCATTACCTA CAACAACCCT 
GATGTGGTGT TAATTGTATT GCTCATCGAT GAACGTCCTG AAGAAGTGAC CGAGATGCAG 
CGCCTAGTGA AAGGCGAAGT GATTGCATCA ACCTTCGATG AGCCTGCTAG CCGTCACGTA 
CAAGTGGCTG AAATGGTCAT TGAAAAAGCC AAGCGCTTGG TTGAGCACAA GAAAGACGTG 
GTTATCTTAC TTGACTCTAT TACCCGTCTG GCCCGTGCCT ACAACACAGT GATCCCTTCA 
TCGGGTAAAG TGTTAACCGG TGGTGTGGAT GCCAACGCCC TGCACAGACC AAAGCGATTC 
TTTGGTGCAG CTCGTAATAT CGAGCACGGC GGCAGCTTAA CCATTATCGC CACCGCTCTG 
GTAGATACCG GTTCTAAGAT GGATGAAGTG ATTTACGAAG AATTTAAAGG TACAGGTAAC 
CAAGAGTTAC ACCTTTCTCG TAAAGCCGCT GAAAAGCGCG TCTTCCCAGC GATTGACTTC 
AATCGCTCTG GTACTCGTCG TGAAGAGAAG CTGACTACGA CTGAAGAACT ACAGAAGATG 
TGGATTTTGC GTAAAATTCT TCACCCTATG GATGAAGTTG CCGCAATGGA ATTCCTTATC 
GACAAATTGG CCATGACCAA GACTAACGAT GAATTCTTTA CCGCGATGAA ACGCGCCAAG 
TCTTAA 

 

Protein sequence

MNLTELKDTP ISDLVSLAET MKLENMARTR KQDIIFSILK AHAKSGEDIF GGGVLEILQD 
GFGFLRSSDG SYLAGPDDIY VSPSQIRRFN MRTGDSIFGK IRPPKEGERY FALLKVSEVN 
FDKPESSKNK ILFENLTPLH AEERLRMERG NGSTEDITAR ILDLCSPIGK GQRGLIVAPP 
KAGKTLLLQN IAQSITYNNP DVVLIVLLID ERPEEVTEMQ RLVKGEVIAS TFDEPASRHV 
QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGVD ANALHRPKRF 
FGAARNIEHG GSLTIIATAL VDTGSKMDEV IYEEFKGTGN QELHLSRKAA EKRVFPAIDF 
NRSGTRREEK LTTTEELQKM WILRKILHPM DEVAAMEFLI DKLAMTKTND EFFTAMKRAK 
S