| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0436 |
|---|
| Symbol | |
|---|
| ID | 4017970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 506071 |
|---|
| End bp | 506559 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637954422 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_561451 |
|---|
| Protein GI | 91791800 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2862] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR00645] conserved hypothetical transmembrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00784425 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAG TGTTTGAAAA ATTGATGTAC GCATCGCGCT GGATCATGGC GCCTATTTAC
TTAGGCTTAA GCCTCATCTT ATTTGCCTTA GGCATAAAGT TCTTTCAAGA AATTTTTCAT
CTCATCCCCA ATATCTTCGA GATAGCTGAA GTGGACTTAG TGCTTATCAC ACTGTCACTT
ATAGATATCA CTTTAGTGGG TGGTCTGCTC ATCATGGTGA TGTTTTCGGG CTATGAAAAC
TTCGTCTCAC AACTCGATGT GGGTGAAAGC AGTGAAAAAC TCAACTGGCT TGGCAAGATG
GACGCTGGCT CCCTTAAAAA CAAGGTGGCC GCCTCTATCG TGGCGATTTC ATCCATTCAC
CTGCTAAAGG TATTTATGAA TGCCGAAAAT ATCGCTAACG ACAAGATCAT GTGGTATTTG
CTCATTCACA TCACCTTTGT GCTATCCGCC TTCGCCATGG GCTATTTGGA TAAAATCACC
CGTAAATAA
|
|---|
| Protein sequence | MEKVFEKLMY ASRWIMAPIY LGLSLILFAL GIKFFQEIFH LIPNIFEIAE VDLVLITLSL
IDITLVGGLL IMVMFSGYEN FVSQLDVGES SEKLNWLGKM DAGSLKNKVA ASIVAISSIH
LLKVFMNAEN IANDKIMWYL LIHITFVLSA FAMGYLDKIT RK
|
|---|
| |