Gene Sden_0429 details

Gene Information

• Locus tag: Sden_0429
• ID: 4017963
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 498966
• End bp: 500912
• Gene Length: 1947 bp
• Protein Length: 648 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637954415
• Product: GGDEF domain-containing protein
• Protein accession: YP_561444
• Protein GI: 91791793
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain; [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAGTGG ATCTACAAAA AGGCCAACTC ACTAGCGCTT CATATACGCT CTTTTCAGAA 
GATGACAAAG TGCAGCGTCT GAAGTTGACA CTGAAGATAT TAATTACCAT TCTTGTTTTA 
TTGCTTGCCT GTGAACTGTA TTTTAATGGT TTTCCAACTG CAAATGTAAG TTCAATATCT 
AGGTTAGCAG TGGCGATGTT GTCATCCATT GTCATTCTGG TCTTTTTTTT CTTGTGGACA 
TCACCTGATA CTTGCAGTGT GATTTCAGGC ATGGTGTTGT GGCTAGTGGC GGTATTCATT 
ACCTGCGCTT GTTGGTTAGG TAATGGTATC TTTGATACCA GTATATTAGC TTTTCCTTGT 
CTACTCCTGT TAGCCGTTAT TTTATCTGGA AAATTAATTT TCACGTCTAT CTTCGTATAC 
CTTATTAGCG CGTTATGTTT CTTTGCTTAT TCACATAGCC AAGGCTTATT AACAGGTGCA 
ATATTGGTTG ATGAAGTGCC TTTATCAGCG CGAGTGATTA GTTACCTTAT AACACTTACT 
TTTTTCTCGG TGGGTGTGTT TTATGTTTTC AAAGATATAC GAATAAGATT TAAACGCCTG 
TTAAAGAAAA ACAATGCCCT TGAAATATCA AATTTCAAAT TAAGAGAGCT TAGCCGTTAT 
GATCAGCTAA CACTTTTGCC TAATGAAAAT GCCTGTAAAA CTTATCTTGA GCAAATATTG 
CAGCAACAAA AACCTTCTAG TCACATACTC GCTTTTATCA CAGTGAATAT CAGCAATTTA 
GCGTCAATTA AGATAAATTA CAGCCATACT CTTTGTGATA AAACATTAAT AATGTTAGCT 
CAGGCATTGT CACTTTACGC CAGTGAGAGC GCAGTCATTT ATCGATTTCA ACAAAATGAA 
TTTGTTATTT TAAAGCATTC TGCAGATCAT CGCGGTATTA GTAAGTTTGC TGAAAAAATT 
CATCAAGCTT GTTCGCAAAC GTTTCATGTA GAAGACTTTG ACATAGTACT TCAACCTAAT 
ATAGGTATAG CGATTGCGCC TTTTGATGGT CGCTCAATGG AAGAATTAAG ACACAATTCG 
CTGCTTGCAG TGCATGCTAA ATTTGATGGA AATAAAGCCG ATTTTAATTT CTTTGATCAA 
GCGATGGCCG ATAAAGAACG GCATAAATTA CAGCTCACTA AAGCATTAAG AAATGCCATT 
ATTAACAATG AACTCGTGTT ACATTTTCAG CCGCAAATCG ATTTAGAAAC CGGCCAAATC 
ATTGGTGCAG AAGCGTTAAT TCGTTGGATG AGTCCTCAGT ACGGTTTCGT TCCACCGACG 
GTATTTATTC CTTTAGCTGA GCAAGCGGGT GTCATTACCG ACATCACCCA GTGGGTCATT 
GAACACTCAG TCAAAGCATG TCAGCAATGG CACCAGTTGG GTTTCAATAA ACTGTGCGTC 
GCCGTTAATT TATCTGCCGA AGACTTTAAG CGCGGCAACC TTGTCACATA CACTATGAGT 
ATTTTGCATC AGGCAAACTT ACCCGCGCAC TTTTTAGAAT TAGAGTTGAC CGAGTCAATG 
TTGATGGATG ATATTAATAA TATTCAAAAA CAAATCAACG AGTTACGGGC TTTTGGCATT 
TCATTTTCTA TCGACGATTT TGGCACTGGT TACTCAAACC TCGGTTATTT AACAAAATTC 
AATGTCAGCA CCATCAAGAT TGACCGTTCA TTTGTGGCTA ACATTTGCCA ATCGAGTAAT 
GAGTTACAAA TTGTCAAAGC CATCATCGAA ATGAGCAAAA GCCTCAGCAT TACCAATGTT 
GCCGAAGGGA TTGAAGATAG CGAAACGGCG CTGATGCTCA GCAAACTAGG CTGTGAAGTA 
GGCCAAGGTT ACCTCTGGTC ACAACCGTTA ACACAACAAG ATTTAATAGT GTTATTGTCA 
GCAAAACATA AAGAACTAAG CTACTGA 

 

Protein sequence

MIVDLQKGQL TSASYTLFSE DDKVQRLKLT LKILITILVL LLACELYFNG FPTANVSSIS 
RLAVAMLSSI VILVFFFLWT SPDTCSVISG MVLWLVAVFI TCACWLGNGI FDTSILAFPC 
LLLLAVILSG KLIFTSIFVY LISALCFFAY SHSQGLLTGA ILVDEVPLSA RVISYLITLT 
FFSVGVFYVF KDIRIRFKRL LKKNNALEIS NFKLRELSRY DQLTLLPNEN ACKTYLEQIL 
QQQKPSSHIL AFITVNISNL ASIKINYSHT LCDKTLIMLA QALSLYASES AVIYRFQQNE 
FVILKHSADH RGISKFAEKI HQACSQTFHV EDFDIVLQPN IGIAIAPFDG RSMEELRHNS 
LLAVHAKFDG NKADFNFFDQ AMADKERHKL QLTKALRNAI INNELVLHFQ PQIDLETGQI 
IGAEALIRWM SPQYGFVPPT VFIPLAEQAG VITDITQWVI EHSVKACQQW HQLGFNKLCV 
AVNLSAEDFK RGNLVTYTMS ILHQANLPAH FLELELTESM LMDDINNIQK QINELRAFGI 
SFSIDDFGTG YSNLGYLTKF NVSTIKIDRS FVANICQSSN ELQIVKAIIE MSKSLSITNV 
AEGIEDSETA LMLSKLGCEV GQGYLWSQPL TQQDLIVLLS AKHKELSY