| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0406 |
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| Symbol | |
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| ID | 4017152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 471508 |
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| End bp | 473520 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954389 |
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| Product | ATP-dependent DNA helicase Rep |
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| Protein accession | YP_561422 |
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| Protein GI | 91791771 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01074] ATP-dependent DNA helicase Rep |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTTA ACCCCGCCCA AAACGATGCC GTCCATTATG TCTCTGGTCC ATGCCTAGTG
CTTGCCGGTG CGGGCAGTGG CAAGACGCGG GTTATTATCA ATAAAATTGC TTATCTGGTT
GAAAAATGTG GCTACAAGGC GAGAAATATC GCCGCGGTAA CCTTTACCAA TAAGGCCGCC
CGAGAAATGA AAGAGCGTGT GGCTCAATCT ATGGGGCGTA AAGAGGCACG GGGCCTGTGG
ATCTCTACCT TTCATACCTT AGGGCTTGAA ATCATTAAGC GTGAATACAA GGTATTAGGG
CTAAAGGCGG GTTTTTCATT ATTTGACGAC CAAGATACCT TAGCACTATT AAAAGATCTC
ACCGAAGATG AGTTTGATGG TGATAAAGAC TTGCTCAAAG CCCTTGCCAG TGCAATTTCT
AATTGGAAGG GCGATCTGGT TATCCCTGCC CAAGCTCGTA AGCTTGCCAA GGATGAACAG
AGCCAGCTAT TTAGCTTCTT GTATCAAAAA TATGCCCAGC AGATGAAGGC CTATAACGCC
TTAGACTTCG ATGATTTGAT CTTGCTACCT ACCTTGTTAC TTAGGCACAA TGAAGAAGTG
CGCACTCGCT GGCAGACTCG TATTCAATAC CTGCTGGTGG ACGAATATCA AGACACCAAT
ACCAGCCAAT ACGAGTTAGT AAAACTCTTA GTTGGCGAGC GTTCACGATT TACTGTGGTT
GGGGATGACG ATCAGTCCAT CTATTCTTGG CGTGGTGCTA AGCCGCAGAA CTTGGTACTG
CTGGGTAAGG ACTTCCCAGC ACTTAAACTC ATTAAGTTGG AGCAAAATTA TCGCTCCAGC
CAGCGTATCT TACGCGCGGC TAACATCTTA ATTGCTAATA ATCCTCACGT GTATGACAAA
GCCTTATTCA GTGAACTTGC CTATGGTGAG CCGCTTAGGG TGTTAATTGC CGCCAACGAG
GAGCAAGAAG CCGAGCGAGT GGTAGCGGAG ATAGTTCGCC ACAAGTTTGT CGGCCGGACC
AAGTTTGGGG ACTACGCCAT CTTGTACCGT GGTAATCATC AATCTCGCTT GCTGGAGCGA
GCGCTGATGA CTAACCGTAT TCCCTATAAA ATCAGTGGTG GCACCTCATT TTTTGCTCGC
GCCGAGATTA AAGACATCAT GGCTTACCTA AAGCTTGTGG TTAATCCCGA TGATGACAAT
GCGTTTTTGC GGGTGGTGAA CTTACCTAAA CGTGGCATAG GTCCTGCCTC CCTTGAGCGC
TTAGGCAGCT TTGCCAATGA GAAGCATATT TCGCTATTTT CAGCGATTTT TGAAGGGGAG
CTTAATCATC ATCTAGCTCC AGCAGCTACG GCGGCCTTAT ATCAATTTGG CCGTTTTATT
GTGGATACTG GCGAAATTGC GACTCGCGGT GAGCCCGTGG ATGCCATCAA GCAATTAATT
CGTAAGATTA ATTACGAAGA TTACCTGTAC GAGACCAGCA CCAGCGCAAA AGCTGCTGAG
ATGCGGATGA AGAACATTTC CGAGTTATAT CGCTGGGTGA CAGAGATGCT GCAAGGGGAT
GAATTGGATG AGCCTATGAC GCTCCCTGAA GTGGTGACCC GCTTGACGCT TCGAGACATG
ATGGAGCGCA ATAATGAGGA TGAGGGCGGC GATCAGGTAC AGTTGATGAC GCTGCATGCC
TCTAAAGGTT TGGAGTATCC CTTCGTGTTT ATGGTGGGCA CTGAGGAGCG TATCTTGCCT
CATCAGGTCA GCATAGATGA AGATAATGTG GATGAAGAGC GCCGTCTTGC CTATGTGGGG
ATTACTCGCG CCCAGAGAGA GCTATGGTTT ACCTTGTGCC GAGAGCGGCG TCAATTCGGT
GAAACCATGC GCTGTGAGCC AAGCCGCTTT TTACTTGAGC TACCTCAAGA TGATTTGATT
TGGGAAAACC GTAAACCGGT ACAAACAGAA GAACAGAGGC AAGAGACAGG CAAGTCACAT
ATCGCCAATT TGCGGGACAT GTTTAAGAAA TAG
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| Protein sequence | MKLNPAQNDA VHYVSGPCLV LAGAGSGKTR VIINKIAYLV EKCGYKARNI AAVTFTNKAA
REMKERVAQS MGRKEARGLW ISTFHTLGLE IIKREYKVLG LKAGFSLFDD QDTLALLKDL
TEDEFDGDKD LLKALASAIS NWKGDLVIPA QARKLAKDEQ SQLFSFLYQK YAQQMKAYNA
LDFDDLILLP TLLLRHNEEV RTRWQTRIQY LLVDEYQDTN TSQYELVKLL VGERSRFTVV
GDDDQSIYSW RGAKPQNLVL LGKDFPALKL IKLEQNYRSS QRILRAANIL IANNPHVYDK
ALFSELAYGE PLRVLIAANE EQEAERVVAE IVRHKFVGRT KFGDYAILYR GNHQSRLLER
ALMTNRIPYK ISGGTSFFAR AEIKDIMAYL KLVVNPDDDN AFLRVVNLPK RGIGPASLER
LGSFANEKHI SLFSAIFEGE LNHHLAPAAT AALYQFGRFI VDTGEIATRG EPVDAIKQLI
RKINYEDYLY ETSTSAKAAE MRMKNISELY RWVTEMLQGD ELDEPMTLPE VVTRLTLRDM
MERNNEDEGG DQVQLMTLHA SKGLEYPFVF MVGTEERILP HQVSIDEDNV DEERRLAYVG
ITRAQRELWF TLCRERRQFG ETMRCEPSRF LLELPQDDLI WENRKPVQTE EQRQETGKSH
IANLRDMFKK
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