| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0394 |
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| Symbol | |
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| ID | 4017528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 462236 |
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| End bp | 462949 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954379 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_561412 |
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| Protein GI | 91791761 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCAAT ACCTAAGATT ACGAGCATTC AAGGCCATAA GTTTTGACCT CGATGATACC
TTGTATCACA ACACGCCTTA TCTGCAATTG GCGACGGACA AGTTTTTTGC CTTTCTCAAT
CAGAATTACC CTAAGACGCA AACCTTGCAC GCTCAAGGCT GGCTGACGAT TAAACACGAT
TTGTTTGACT TGCACCCAGA GCTTAAACAC GACACCAGCG CTGCTCGCTA CGCCATGGTT
CACGATGGGC TAATGAGTTT AGGTTACAAG GAGAGTGAGG CCAGTGAAGG CGCACAGAAA
TCCATGGCCT GTTTTCATTT TTATCGCAGC GATTTTACCT TAGACGACAA GGTGCTGAAT
TTACTCAAGC AGCTCGCCGA GTCAGTCACC TTGGTTGGAA TCAGCAATGG CAATGTGGAT
GCCAGTCGTA TTGGCTTGAG TGAGTCGCTA GCGTTTGTGC AGCATCCAGG TCATGGGGTG
AAGATGAAGC CTCATGGGGA TATGTTTGAG CTGGCGTGCC AGCGCTTGAA TATTTCTCCC
GCTGAACTGC TGCATGTGGG TGACCATCAA ATGGCCGATG TGAGTGGTGC CCGCCGCGCC
GGATGTCAGA GCGTATGGTT TAATCCTGAA AAGCATCCGC TAACACGCCG CACCGGTAGT
ATCTTGCCTC ATGTTGAGCT TGATGATCTG AATAAATTGC TTAATTTAGT CTGA
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| Protein sequence | MKQYLRLRAF KAISFDLDDT LYHNTPYLQL ATDKFFAFLN QNYPKTQTLH AQGWLTIKHD
LFDLHPELKH DTSAARYAMV HDGLMSLGYK ESEASEGAQK SMACFHFYRS DFTLDDKVLN
LLKQLAESVT LVGISNGNVD ASRIGLSESL AFVQHPGHGV KMKPHGDMFE LACQRLNISP
AELLHVGDHQ MADVSGARRA GCQSVWFNPE KHPLTRRTGS ILPHVELDDL NKLLNLV
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