| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0391 |
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| Symbol | dapF |
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| ID | 4017525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 459600 |
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| End bp | 460427 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637954376 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_561409 |
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| Protein GI | 91791758 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATCCATT TCACTAAGAT GCACGGGTTA GGCAATGACT TTATGGTTGT CGATGGCGTG
ACCCAGAATG TATTTTTCTC CCCAGAGCAG ATCCGTCGCC TTGCTAACCG TAATTTTGGT
GTGGGCTTTG ACCAACTACT CTTGGTCGAA CCCCCCTATG ATCCCGACTT AGATTTCCAT
TACCGCATTT TTAATGCCGA TGGCAGCGAA GTCGAACAGT GCGGCAATGG CGCCCGTTGT
TTTGCCCGCT TCGTTCGCAA TAAGGGTTTG ACACAGAAGA ATAAAATTCG CGTGAGCACC
TCTTCTGGGA AGATGACACT AAGGCTTGAG CGTGATGGTA GCGTAGTGGT CAACATGGGC
GTGCCCGTGA CGGATCCTAG CAATATTCCT TTTAAGGCCA AGAAAGTCGA AAAAACTTAT
CTGTTGCAAA CGCCAGTGCA AACCTTTCTC TGCGGTGCTA TTTCCATGGG TAATCCCCAT
TGTGTTATCG AAGTGGATGA CATTGACACT GTGGCCGTGG ATGAAATTGG CGCGCTTTTG
ACCCGTCACG AACGTTTCAG TAAAGGGGTC AATGTGGGCT TTATGCAAAT CATTAATCCG
GGGCACATTA AGCTTAGGGT CTATGAGCGC GGCGCCGGGG AAACCTTAGC CTGCGGTACG
GGTGCCTGTG CTGCAGCGGC CATAGGTCAG CTGCAAGACA AGCTTTCACG TCAGGTTAGG
GTTGATTTAC CTGGCGGTAC ATTGCACATT GATTGGGACG GCGAAGGTAA GCCTTTATGG
ATGACCGGCC CAGCAGAACA CGTTTACGAT GGACAAATTC AGTTATGA
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| Protein sequence | MIHFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLANRNFG VGFDQLLLVE PPYDPDLDFH
YRIFNADGSE VEQCGNGARC FARFVRNKGL TQKNKIRVST SSGKMTLRLE RDGSVVVNMG
VPVTDPSNIP FKAKKVEKTY LLQTPVQTFL CGAISMGNPH CVIEVDDIDT VAVDEIGALL
TRHERFSKGV NVGFMQIINP GHIKLRVYER GAGETLACGT GACAAAAIGQ LQDKLSRQVR
VDLPGGTLHI DWDGEGKPLW MTGPAEHVYD GQIQL
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