| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0382 |
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| Symbol | |
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| ID | 4017516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 436330 |
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| End bp | 437712 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637954367 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_561400 |
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| Protein GI | 91791749 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATA AACTCACCAG TCAAGATCTT GAAATGGTTA ATGATGTTTA TGGTGCCATG
CTATCAGATG CACCAACAGG CCATAGACTG ATTATCTGGA CGCTTACAGG CATGATGGTC
AGTTTTATCA TTTGGGCTTA TTTTTCTGAA CTAGATCAAG TCACCACGGG CACAGGTAAG
GTGATCCCTT CCTCTCAAGT GCAATTAATT GACAGCTTAG ATGGCGGTGT ATTGCAGGAG
ATTTTCGTTG AAGAAGGTGT TCTGGTTACC AAAGGGCAGC CACTTGCGCG TATCGATGAC
ACGCGTTTCC GTTCTGATTT TGCCCAACAA GAACAAGAAG TTTATGGATT GCAAACCAAT
GTGCTAAGAA TGCGCACTGA GTTAGACAGC ATACTTATCT CTGACATGTC GTCAAACTGG
CGTGAACAAG TACTTATTAC TAAGCAAGAC CTAGTATTCC CTGTCGAACT GATAGAGCAA
GAACCTGAGC TAGTGAAACG TCAGCAAGAA GAATATAACG GCCGTTTAGA TAATTTAAGT
AATCAACTTG AAATTTTAGT CCGTCAAATT CAACAGCGAC AACAGGAAAT TGAAGAGCTT
GCCTCTAAAA TAACCACCTT AACTAAAAGC TACCAGTTGG TGTCTCGAGA ATTAGAACTG
ACTCGCCCCT TAGCTCAAAA AGGCATAGTC CCTGAGGTTG AGCTGCTGAA ACTAGAGAGA
ACGGTCAACG ATATTCAGGG GGAGCTTAAA ACCTTAAGAA TTTTACGCCC GAAGATGAAA
GCCTTAATGG ATGAAGCCAT TCTTAAAAGA CGAGAAGCTG TTTTCATTTA CGCTGCTGAC
TTACGCGCGC AACTTAATGA ATTACAAACT AAACTATCAA GAATGAACCA AGCTCAAATC
GGTGCATTTG ACAAAGTGAG TAAGGCTGTT ATTACATCCC CGGTAAACGG GACTATAAAA
ACAATACATA TCAATACATT AGGCAGCGTT GTTCAGCCGG GGGAGGAGAT TATTGAAATT
GTTCCATCAG AAGATCAATT ACTGATAGAG ACTAAGATTG CCCCTAAAGA TATTGCATTT
TTGCACCCAG GCTTGCCCGC AATAGTCAAA GTCACAGCCT ATGATTTTAC CCGTTACGGC
GGATTACAAG GCACTGTAGA ACACATAAGC GCCGATACAT CTCAGGATGA AGAAGGCAAT
AGCTTCTACA CCATAAGGGT AAGAACAAAA GAATCGAGTT TAATAAAAGA CGATGGCACG
CAGATGCCAA TTATTCCTGG GATGTTGACT AGCGTTGATG TCATTACAGG AAAAAGATCA
ATACTTGAGT ACATCTTAAA TCCAATACTA AGAGCAAAAG ATACAGCGCT TAGAGAGCGT
TAG
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| Protein sequence | MSNKLTSQDL EMVNDVYGAM LSDAPTGHRL IIWTLTGMMV SFIIWAYFSE LDQVTTGTGK
VIPSSQVQLI DSLDGGVLQE IFVEEGVLVT KGQPLARIDD TRFRSDFAQQ EQEVYGLQTN
VLRMRTELDS ILISDMSSNW REQVLITKQD LVFPVELIEQ EPELVKRQQE EYNGRLDNLS
NQLEILVRQI QQRQQEIEEL ASKITTLTKS YQLVSRELEL TRPLAQKGIV PEVELLKLER
TVNDIQGELK TLRILRPKMK ALMDEAILKR REAVFIYAAD LRAQLNELQT KLSRMNQAQI
GAFDKVSKAV ITSPVNGTIK TIHINTLGSV VQPGEEIIEI VPSEDQLLIE TKIAPKDIAF
LHPGLPAIVK VTAYDFTRYG GLQGTVEHIS ADTSQDEEGN SFYTIRVRTK ESSLIKDDGT
QMPIIPGMLT SVDVITGKRS ILEYILNPIL RAKDTALRER
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