| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0375 |
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| Symbol | |
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| ID | 4017509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 427546 |
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| End bp | 429834 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637954360 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561393 |
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| Protein GI | 91791742 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.93912 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAACCA GTTTTCGAGC CCGTTTAATT ATTACTTTGT TGCTGGTATT GACCTTAGTG
CAACTTATCA CCGCAGTGGC AGTGCTCACG GCCACTCGCG AAGATAACCT TTTGCAACAG
CAAAAAAGTT TGGATATTGG TGTCAACGTT TTTAATGAAG TACTTAGTAA TCGTGGTAAT
CAGCTTAATC AAAGCTTATC CGTGCTCAGT GCTGACTTTG GATTTAAGCG CGCCATCGCC
ACAGGAGAGC AAGAGACAAT ATCATCTGTG CTAGCCAATC ATGGCACTCG GATTGGCGCC
CATGCGGCGG TAATATTATC CCCCAAAGGC GCACTATTAA GCTCAAGTCT TGCCGACCTC
AAACAAGCAG ATATCGACGC CTTATTTGAA ATGTCGGCTA ATAAAGGTAA GGGCTTGAAT
ATCTTAAGCC TAGAAAATCA AAGCTATCAA TTTGTGTTGC AGCCAGTTAA AGCCCCAACA
CTGATTGCTT GGGTCGGGAT GGGCTTCTTG CTCGACAACA AAGTGGCGCA GCAGGCTAAG
GCCATTACAG GTATCGACAT CAGTTTTGTT AATCAAACCG AAAATAGCCT CAAGCTAGTT
TCAACCTTGG CTAAAGCCGA TAGTCAAAGC CTGTTATCCA AGGTCAATAT TAACAGTTTG
CTGAATCGCC CCTCCCTCTC CTTGCCAGAC GATCATCTGT CTACTGCGAT TGCCTTAGAT
CCCCGTCATG ACAAGCTTTG GGCTGTCTTG CATCAATCTA ATGCCAAATG GCAGCAAAGT
TACCTGCAAT TGCGCAATAC CTTGATGCTG ATTTTTGCCT TCACCTTAGC CTTTGCCTTG
ATAATTGCCA CTTGGCTTGC CACAGGACTC AGCACCCCGC TTGAACGCTT GGTCCGCTAT
GCCAGAAAAA TCGGCCAAGG CCAAACACCT GAACGCATCC AAGGTGCCCC CACTGAGTTA
CAAGCCTTGG CAGACAGTTT AGTGCTGATG CGTGAAGACA TAGAGGCGCG TGAGAAAGAC
TTATTGTTTC AGTCTCAACA CGATGATCTC ACTGGGCTTC TCAACCGCTT TTCAGTCAAA
CGCCAGCTGG CGGAGCAACA AGAGTGCTTA AGCGGTAGCT TGATCTTGCT CGATATTAAG
CGCTTTCGCC ATATCAACGA CATCATAGGC TTCAACAATG CCGATCGTTT GCTGGTATTG
TTTGCCCAGC GCTTAACTCA ATTAACCCCA AGCCCTGCTC GAATCGCACG ATTAGATGGG
GATGCTTTCC TATTGCATTA CCCAAGCCCG ATGGAAATTG AACTCTTGCA TCTGGCACTT
AATAGCCTAG AAGCGCCTTT TTCCATCGAT GGCTCAAAGA TTTCAATGGA AGTCAGGGCG
GGTTTGGTTT CCATTGCGGC CAACGGCTAC GACATAGATA TACTCATTCG CCGCGGCGAA
ATAGCGCTCA ATCAGGCGCG GGCTGAAGAT GTGCGCATTC TGAGTTATCG CCAAGGCTCG
GATGAGCAAT ATCAAAGAGA GCTCAAGATT ATTCGCGACC TCCCCCTTGG ACTTAAATCA
AACCAGCTTT ATTTAGTGTT CCAGCCTAAG GTCACGCTAG CATCAAACCA GTGCGCCGCA
GCAGAAGCCC TGATCCGCTG GCAGCACCCG GAATTGGGCT TTATTGCCCC AGATGAGTTT
ATTCGTTTGG CCGAAAACTC AGGCAATATC AACATGGTCA GCCAATGGGT CGTCAATGAG
TCCATAAAGC AGCTGGCTGC CTGGCAACAA CAAGGGATAA TACTGAAACT TGCCATTAAC
TTATCTGCCC ACGACTTAAG TAATAAAGCA CTTCCCAGCC AAATCGCCAC TCAACTGAAT
GCTCAGGGCC TAGCTTATGA CGCATTAAGC ATAGAGGTGA CCGAAGGCGC TGTGATGAAA
GATCCAGACG CCGTGATTGC GGTACTGCAA GATTTTCGTG ATATTGGCAT CTCGATTGCG
ATAGATGATT TTGGTACGGG TCACTCATCC CTGGCCTATT TAAAGCTACT GCCCGTTGAT
GAGGTCAAAA TTGATCGTAG TTTCGTCAAA GACATGTTCA TCAACAAGCA AGATGCCATG
ATAGTTGAGA CCAGCATTCA ATTGATCCAT GGTTTAGGCA TGAGCGTGGT GGCCGAAGGG
GTCGAAGAGC AAGAAACCGT TGAGTTACTC AAAGCAATTA ATTGCGACAT CATTCAAGGT
TATGTATTTT CAAAACCGTT AAAAAATGAA GACTTTTCAC TTTGGTTTCA TGATTTTAAT
CAAGTTTAG
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| Protein sequence | MLTSFRARLI ITLLLVLTLV QLITAVAVLT ATREDNLLQQ QKSLDIGVNV FNEVLSNRGN
QLNQSLSVLS ADFGFKRAIA TGEQETISSV LANHGTRIGA HAAVILSPKG ALLSSSLADL
KQADIDALFE MSANKGKGLN ILSLENQSYQ FVLQPVKAPT LIAWVGMGFL LDNKVAQQAK
AITGIDISFV NQTENSLKLV STLAKADSQS LLSKVNINSL LNRPSLSLPD DHLSTAIALD
PRHDKLWAVL HQSNAKWQQS YLQLRNTLML IFAFTLAFAL IIATWLATGL STPLERLVRY
ARKIGQGQTP ERIQGAPTEL QALADSLVLM REDIEAREKD LLFQSQHDDL TGLLNRFSVK
RQLAEQQECL SGSLILLDIK RFRHINDIIG FNNADRLLVL FAQRLTQLTP SPARIARLDG
DAFLLHYPSP MEIELLHLAL NSLEAPFSID GSKISMEVRA GLVSIAANGY DIDILIRRGE
IALNQARAED VRILSYRQGS DEQYQRELKI IRDLPLGLKS NQLYLVFQPK VTLASNQCAA
AEALIRWQHP ELGFIAPDEF IRLAENSGNI NMVSQWVVNE SIKQLAAWQQ QGIILKLAIN
LSAHDLSNKA LPSQIATQLN AQGLAYDALS IEVTEGAVMK DPDAVIAVLQ DFRDIGISIA
IDDFGTGHSS LAYLKLLPVD EVKIDRSFVK DMFINKQDAM IVETSIQLIH GLGMSVVAEG
VEEQETVELL KAINCDIIQG YVFSKPLKNE DFSLWFHDFN QV
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