Gene Sden_0356 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0356 
SymbolmurC 
ID4017879 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp397702 
End bp399141 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content49% 
IMG OID637954337 
ProductUDP-N-acetylmuramate--L-alanine ligase 
Protein accessionYP_561374 
Protein GI91791723 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0773] UDP-N-acetylmuramate-alanine ligase 
TIGRFAM ID[TIGR01082] UDP-N-acetylmuramate--alanine ligase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.207602 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCAATA CAGAGAAATA CAAGCAATTA CGTAGCATGA TCCCAGAAAT GAGACGGATC 
AAGCATATCC ATTTCGTCGG TATTGGCGGC GCGGGTATGG GCGGTATTGC AGAAGTGTTA
GTCAATGAAG GCTATCACAT CAGTGGCTCA GATATAGCCA CCAACAGTGT GACCGACAGA
TTAATTAGCC TTGGAGCCAA AGTGATTATT GGCCACCATG CTGACAGCGT AGAACATGCC
GATGTGGTGG TGGTATCGAC GGCGATTAAT CATGAAAACC CAGAAATCAT TGCTGCCAAA
GAGCGCCGTA TTCCGATTGT TCGCCGCGCC GAGATGCTCG CCGAACTGAT GCGTTATCGT
CATGGGGTTG CCATTGCTGG CACCCATGGT AAGACGACCA CCACGAGTTT AATTGCTAGC
GTGTATGCCC AGGCACAGCG TGACCCTACT TTTGTGATTG GCGGTCTGCT TAATAGCGCA
GGCACCAATG CCCGTTTAGG CACGAGTCGC TACTTGATTG CCGAAGCGGA TGAAAGTGAT
GCCAGCTTCT TGCATCTGCA GCCTATGGTG AGCGTAATCA CTAACATTGA AGCCGACCAC
ATGGACACCT ATGGCGGCGA TTTTGAGAAA TTAAAAACCA CCTTTGTGGA CTTTTTGCAT
AACCTGCCTT TCTATGGGGT GGCAGTCATG TGTATCGATG ATGAAATCAA CCGTGAAATC
ATGCCTAGGG TGGGCCGTCA AATTGTCACC TATGGTTTTA GTCAAGATGC CGATGTGCAA
GCATTGAATT TTAACCAGAT TGGTCATCAA AGCCAGTTTG TGGTCCGTAG AAAAGACAAA
GAAGACTTAG CCTTAGTGCT TAACTTACCT GGCGAGCACA ATGTGCTCAA TGCATTAGCG
GCGATTGCCG TTGCCAGCGA AGATGATATC GATGATGAGT CTATCGTTAA GGCATTAGCT
GAGTTTGAAG GCATAGGTCG CCGATTCCAG CATTTGGGCG AATTCAACAC GGCCAATGGT
CAAGTGATGT TGGTGGATGA CTATGGTCAT CACCCTAGTG AAGTGTTGGC GACCATCAAA
GCCGCCCGTG CCGGTTGGCC GGATAAGCGC CTAGTGATGG CGTATCAGCC CCACAGATAT
AGCCGTACCC GTGACTTATA TGATGATTTT GTTGAAGTCT TGTCTCAGGT CGATTGCCTG
TTATTACTGG ATGTCTACTC GGCAGGTGAA GCGGCAATTC CTGGTGCGGA TGGACGGGCC
TTATGTCGCT CCATTCGCTT GCGTGGGCAG ATAGACCCTA TTTTTGTGGC AAGTCCGGAT
CAACTAGCCA GTGTATTACC GGATGTATTA CAAGCTGGGG ATTTACTCTT GACTCAAGGC
GCTGGCAATA TAGGCGCCTT GTCAAAACTC TTGGCAAGTA CAAATTTAGG CTTCGAATAG
 
Protein sequence
MTNTEKYKQL RSMIPEMRRI KHIHFVGIGG AGMGGIAEVL VNEGYHISGS DIATNSVTDR 
LISLGAKVII GHHADSVEHA DVVVVSTAIN HENPEIIAAK ERRIPIVRRA EMLAELMRYR
HGVAIAGTHG KTTTTSLIAS VYAQAQRDPT FVIGGLLNSA GTNARLGTSR YLIAEADESD
ASFLHLQPMV SVITNIEADH MDTYGGDFEK LKTTFVDFLH NLPFYGVAVM CIDDEINREI
MPRVGRQIVT YGFSQDADVQ ALNFNQIGHQ SQFVVRRKDK EDLALVLNLP GEHNVLNALA
AIAVASEDDI DDESIVKALA EFEGIGRRFQ HLGEFNTANG QVMLVDDYGH HPSEVLATIK
AARAGWPDKR LVMAYQPHRY SRTRDLYDDF VEVLSQVDCL LLLDVYSAGE AAIPGADGRA
LCRSIRLRGQ IDPIFVASPD QLASVLPDVL QAGDLLLTQG AGNIGALSKL LASTNLGFE