| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0351 |
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| Symbol | |
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| ID | 4017874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 391611 |
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| End bp | 392984 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637954332 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_561369 |
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| Protein GI | 91791718 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGAAT TAACCTTGGA CGCATTAGCC CAAAAGTTAA ATGCCAAGCA CCTTGGAGAA
AACCTCACCA TAGCCAATGT GAGCACAGAC AGCCGCGCAA TACCCGCAGC CTGTTTATTT
GTGGCACTCA AAGGTGAGCG TTTCGATGCC CATGATTTTG CCGCCACGGC CATAGAAAAT
GGTGCCAAGG CCTTGTTGGT GGAGCGCGAG CTTGCGCTGG ATATTCCTCA GCTCATAGTG
GCAAATAGCC AAAAAGCCAT GGGTGAAATC GGCGCGCTAG TGCGAGATAT TGTCTCGCCA
ATATGCGTGG CGCTGACCGG CTCAAACGGT AAGACAAGTG TAAAAGAAAT GCTTGCCAGT
ATTTTATCTC AAGGGCATCA AGTGCTTTAC ACCGCCGGTA ATTTTAATAA TGAAATCGGT
GTGCCGTTAA CCTTATTGCG ATTAAGCCAA GCTGATGAAT ACGGAGTATT TGAGCTGGGA
GCTAATCACA AGGGCGAAAT CGATTACACC TCTTCATTAG TGCGCCCGAG AGTCGCCTTA
GTGAACAACA TTGGCAGTGC TCATTTAGAA GGCTTTGGCT CCATAGAAGG GATAGCCGAG
GCTAAGTCTG AGATATTTAA TCACCTAAGT GCCGATGGTG TAGCAGTCAT TAATGCCGAT
GATGCATTTT GTGAGCTAAT GAAAACCAAG GCCAAGGCGT TTAAGCAGTT GAGTTTTTCC
CGTGAAGCTA ATACTAACGC AGACATTCAA GCCACTGGGC TTAACATGAA TGCTGCGGGC
TGCTATGGCT TTACTATTCA CTATCAAGGG CAGCAGTTGG CTGTGCAATT GCCTTTGGCC
GGTATTCATC AGGTCAGTAA TGCACTGGCA GCCAGTGCCA TGTGTTTAGC CTTAGGCATT
AGCTTAACTG ACATCGTTAG TGGCCTGGCA AGGCTTGCAC CAGTGAAAGG CCGGATGCAG
CCTCATACCT TAGGGCGCCT GCTGGTCATA GATGACAGTT ATAACGCTAA CCCTAGTTCT
GTCAGCGCCG CCATCGACTG GCTTAAAAAT CGTGACGGTT TTTGTTGTTT AGTGCTGGGA
GATTTGGGCG AATTAGGCGA CAATGCGGCC CATTTACATG CACAAGTCGG CCAACAAGCA
AAAGAGGCAC AAATCGATGC GCTATTTTGC TGTGGCAGCT TGAGTGAAAA TACCAGTTTA
GCCTTTGGCA GCCCGCATTA TGCTGAGCTG CCTGCTTTGC TTGTGGAATT AACCTCGGCG
ATTAAGGCCA ATCGCGGCGC TGTGACTGTG TTAGTCAAGG GCTCTCGCAG TGCGCGCATG
GAAAGAGTGG TAGAGAATTT ATTAAATGCT TACGAGCATG GGGAGTTAGC GTAG
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| Protein sequence | MIELTLDALA QKLNAKHLGE NLTIANVSTD SRAIPAACLF VALKGERFDA HDFAATAIEN
GAKALLVERE LALDIPQLIV ANSQKAMGEI GALVRDIVSP ICVALTGSNG KTSVKEMLAS
ILSQGHQVLY TAGNFNNEIG VPLTLLRLSQ ADEYGVFELG ANHKGEIDYT SSLVRPRVAL
VNNIGSAHLE GFGSIEGIAE AKSEIFNHLS ADGVAVINAD DAFCELMKTK AKAFKQLSFS
REANTNADIQ ATGLNMNAAG CYGFTIHYQG QQLAVQLPLA GIHQVSNALA ASAMCLALGI
SLTDIVSGLA RLAPVKGRMQ PHTLGRLLVI DDSYNANPSS VSAAIDWLKN RDGFCCLVLG
DLGELGDNAA HLHAQVGQQA KEAQIDALFC CGSLSENTSL AFGSPHYAEL PALLVELTSA
IKANRGAVTV LVKGSRSARM ERVVENLLNA YEHGELA
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