| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0331 |
|---|
| Symbol | |
|---|
| ID | 4020347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 368582 |
|---|
| End bp | 369046 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637954312 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_561349 |
|---|
| Protein GI | 91791698 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATA ACATTAAAAC CTTAGCACTC GCTCAAGTAG CCGAGGTGTT TGATAAACAC
GTGCCTTTCC ATAACTTGCT GGGGCTCGAT ATCAAGCGTT ACGATGAAAA TGGCGTCGAA
GTGGTGGTCA CCATGAAGCC CGAGTTAATC GGCAACATTC ACCAGCAAAT TCTCCATGGC
GGTGTGACTG CTACTGTATT AGATATTGTT GGCGGTCTCA CCGCGTTTGC AGGCTTAGTG
TCCAGCCATG ATGATTGGAC TCTAGAAGCA CTGCAAGAAA GGCTCACCAC TTTGGGTACT
ATCGATTTAC GCATAGATTA TTTAAGGCCT GGACGCGGTG AGGTGTTTAC TGGCACCGGC
AGCGTTATTC GCTCAGGTAA TCGGGTGTCT GTGTGCCGCA TGGAGCTTCA TAATGAACAA
GGTACTCACA TCGCCTTCGG CACAGGCACC TACATGGTGG GCTAA
|
|---|
| Protein sequence | MSNNIKTLAL AQVAEVFDKH VPFHNLLGLD IKRYDENGVE VVVTMKPELI GNIHQQILHG
GVTATVLDIV GGLTAFAGLV SSHDDWTLEA LQERLTTLGT IDLRIDYLRP GRGEVFTGTG
SVIRSGNRVS VCRMELHNEQ GTHIAFGTGT YMVG
|
|---|
| |